UHGV-1978628

Genome information

Genome length 51,341 bps

CDS count 67

Completeness 90.64% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-1978628
vOTU ID	vOTU-075063
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300022758\|Ga0255597_114597
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.98
Jumbo phage	No

Genome content
Genome length	51,341 bps
GC content	37.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	93.42%
Average CDS length	719.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1978628_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1978628_2	UniRef90	UniRef90_A0A5C7M263	Terminase	NA
UHGV-1978628_2	eggNOG-mapper	691965.D4P7C5_9CAUD	Phage Terminase	NA
UHGV-1978628_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1978628_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1978628_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1978628_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1978628_3	UniRef90	UniRef90_UPI001C016545	phage portal protein	NA
UHGV-1978628_3	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-1978628_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1978628_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1978628_4	KOfam	K06904	NA	NA
UHGV-1978628_4	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1978628_4	UniRef90	UniRef90_A0A6G5Y7H0	BIG2 domain-containing protein	NA
UHGV-1978628_4	eggNOG-mapper	1476888.X4YUP1_9CAUD	peptidase activity	NA
UHGV-1978628_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1978628_4	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-1978628_5	PHROG	phrog_4270	NA	unknown function
UHGV-1978628_5	eggNOG-mapper	478749.BRYFOR_08520	NA	NA
UHGV-1978628_5	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1978628_6	PHROG	phrog_2645	major tail protein	tail
UHGV-1978628_6	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-1978628_6	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-1978628_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1978628_7	PHROG	phrog_4282	NA	unknown function
UHGV-1978628_7	UniRef90	UniRef90_D4P7H5	Gp064	NA
UHGV-1978628_7	eggNOG-mapper	742733.HMPREF9469_05024	NA	NA
UHGV-1978628_8	PHROG	phrog_4338	NA	unknown function
UHGV-1978628_8	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-1978628_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1978628_10	UniRef90	UniRef90_A0A7X5IVV8	HK97 gp10 family phage protein	NA
UHGV-1978628_10	eggNOG-mapper	742740.HMPREF9474_02263	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1978628_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1978628_10	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1978628_13	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-1978628_13	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-1978628_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1978628_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1978628_13	COG	COG5412	Phage-related protein	NA
UHGV-1978628_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1978628_14	UniRef90	UniRef90_UPI000C9C975D	phage tail protein	NA
UHGV-1978628_14	eggNOG-mapper	272626.lin2567	phage tail	NA
UHGV-1978628_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-1978628_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1978628_15	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-1978628_15	PHROG	phrog_1330	tail protein	tail
UHGV-1978628_15	eggNOG-mapper	1158604.I591_00413	Prophage endopeptidase tail	NA
UHGV-1978628_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1978628_15	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1978628_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1978628_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1978628_15	Structural annotation	PF14594, PF00629, PF10528, TIGR01665, NF033675, NF038393, COG4926	NA	NA
UHGV-1978628_17	PHROG	phrog_1554	NA	unknown function
UHGV-1978628_17	UniRef90	UniRef90_A0A0D0YSJ9	NA	NA
UHGV-1978628_17	eggNOG-mapper	997830.HMPREF1124_0611	NA	NA
UHGV-1978628_17	Structural annotation	PF07104	NA	NA
UHGV-1978628_22	PHROG	phrog_1494	NA	unknown function
UHGV-1978628_42	PHROG	phrog_4079	NA	unknown function
UHGV-1978628_42	eggNOG-mapper	665950.HMPREF1025_01947	NA	NA
UHGV-1978628_49	PHROG	phrog_2152	NA	unknown function
UHGV-1978628_49	Pfam	PF19880	NA	DUF6353
UHGV-1978628_49	Structural annotation	PF19880, NF010306	NA	NA
UHGV-1978628_53	PHROG	phrog_2164	NA	unknown function
UHGV-1978628_53	eggNOG-mapper	1260356.D920_00267	NA	NA
UHGV-1978628_58	PHROG	phrog_1485	NA	unknown function
UHGV-1978628_58	eggNOG-mapper	873447.SPB_0706	NA	NA
UHGV-1978628_58	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1978628_61	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-1978628_61	PHROG	phrog_998	endolysin	lysis
UHGV-1978628_61	UniRef90	UniRef90_A0A428EJD2	Autolysin	NA
UHGV-1978628_61	eggNOG-mapper	157924.Q9AF60_9CAUD	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1978628_61	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1978628_61	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1978628_61	Structural annotation	PF19127, PF05382, TIGR04035, NF008096, COG5263, COG3942	NA	NA
UHGV-1978628_64	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1978628_64	UniRef90	UniRef90_UPI001D131FEF	phage/plasmid primase, P4 family	NA
UHGV-1978628_64	eggNOG-mapper	475178.B2BTL9_9CAUD	nucleic acid binding	NA
UHGV-1978628_64	Pfam	PF19263	NA	DUF5906
UHGV-1978628_64	Structural annotation	PF05272, PF09079, MF_00016, NF011296, COG3378	NA	NA
UHGV-1978628_65	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-1978628_65	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1978628_65	UniRef90	UniRef90_A0A6G5Y767	SF3 helicase domain-containing protein	NA
UHGV-1978628_65	eggNOG-mapper	475178.B2BTL9_9CAUD	nucleic acid binding	NA
UHGV-1978628_65	Structural annotation	PF00136, PF09250, MF_04100, NF004417, COG0417	NA	NA
UHGV-1978628_66	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1978628_66	eggNOG-mapper	411460.RUMTOR_01384	NA	NA
UHGV-1978628_66	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-1978628_67	eggNOG-mapper	742733.HMPREF9469_05062	Helicase conserved C-terminal domain	NA
UHGV-1978628_67	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA