UHGV-1979242

Genome information

vOTU vOTU-022017

Genome length 32,174 bps

CDS count 52

Completeness 82.10% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1979242
vOTU ID	vOTU-022017
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023312\|Ga0256721_100715\|provirus_4807_36980
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.21
Jumbo phage	No

Genome content
Genome length	32,174 bps
GC content	57.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.20%
Average CDS length	574.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1979242_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1979242_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1979242_1	UniRef90	UniRef90_G9RTV0	HTH cro/C1-type domain-containing protein	NA
UHGV-1979242_1	eggNOG-mapper	665956.HMPREF1032_02984	Peptidase S24-like	NA
UHGV-1979242_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1979242_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1979242_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1979242_1	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-1979242_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1979242_2	UniRef90	UniRef90_G9RTU9	HTH cro/C1-type domain-containing protein	NA
UHGV-1979242_2	eggNOG-mapper	665956.HMPREF1032_02983	Helix-turn-helix XRE-family like proteins	NA
UHGV-1979242_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1979242_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1979242_10	PHROG	phrog_310	transposase	integration and excision
UHGV-1979242_10	UniRef90	UniRef90_D1PRI1	Mu transposase domain protein	NA
UHGV-1979242_10	eggNOG-mapper	665956.HMPREF1032_02979	Mu transposase, C-terminal	NA
UHGV-1979242_10	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-1979242_10	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-1979242_10	Pfam	PF02914	Bacteriophage Mu transposase	DDE_2
UHGV-1979242_10	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-1979242_10	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1979242_10	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-1979242_11	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-1979242_11	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-1979242_11	UniRef90	UniRef90_G9RTU4	HTH cro/C1-type domain-containing protein	NA
UHGV-1979242_11	eggNOG-mapper	665956.HMPREF1032_02978	AAA domain	NA
UHGV-1979242_11	Pfam	PF13401	AAA domain	AAA_22
UHGV-1979242_11	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-1979242_14	PHROG	phrog_2717	NA	unknown function
UHGV-1979242_14	eggNOG-mapper	665956.HMPREF1032_02973	NA	NA
UHGV-1979242_15	UniRef90	UniRef90_UPI001967CCF1	helix-turn-helix domain-containing protein	NA
UHGV-1979242_15	Structural annotation	PF04218, NF040595, COG1710	NA	NA
UHGV-1979242_19	Structural annotation	PF06657	NA	NA
UHGV-1979242_22	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1979242_22	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-1979242_22	eggNOG-mapper	665956.HMPREF1032_02965	Bacteriophage Mu Gam like protein	NA
UHGV-1979242_22	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-1979242_22	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-1979242_22	Structural annotation	PF07352, COG4396	NA	NA
UHGV-1979242_23	PHROG	phrog_286	NA	unknown function
UHGV-1979242_23	UniRef90	UniRef90_A0A372V3L1	Regulatory protein GemA	NA
UHGV-1979242_23	eggNOG-mapper	665956.HMPREF1032_02964	NA	NA
UHGV-1979242_23	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-1979242_23	Structural annotation	PF06252	NA	NA
UHGV-1979242_24	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-1979242_24	UniRef90	UniRef90_G9RTS9	Mor domain-containing protein	NA
UHGV-1979242_24	eggNOG-mapper	665956.HMPREF1032_02963	Mor transcription activator family	NA
UHGV-1979242_24	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-1979242_24	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-1979242_24	Structural annotation	PF08765, COG5566	NA	NA
UHGV-1979242_25	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-1979242_25	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-1979242_26	PHROG	phrog_25462	NA	unknown function
UHGV-1979242_26	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-1979242_26	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-1979242_27	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-1979242_27	UniRef90	UniRef90_A0A6I2UDS2	NA	NA
UHGV-1979242_27	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-1979242_27	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-1979242_27	Structural annotation	PF11985	NA	NA
UHGV-1979242_28	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-1979242_28	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-1979242_28	UniRef90	UniRef90_G9RTS5	NGN domain-containing protein	NA
UHGV-1979242_28	eggNOG-mapper	665956.HMPREF1032_02959	Transcription termination factor nusG	NA
UHGV-1979242_28	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-1979242_28	Pfam	PF00467	KOW motif	KOW
UHGV-1979242_28	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-1979242_28	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-1979242_29	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-1979242_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1979242_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1979242_30	UniRef90	UniRef90_G9RTS3	PBSX family phage terminase, large subunit	NA
UHGV-1979242_30	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-1979242_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1979242_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1979242_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1979242_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1979242_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1979242_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-1979242_32	UniRef90	UniRef90_G9RTS1	A118 family phage portal protein, putative	NA
UHGV-1979242_32	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-1979242_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1979242_33	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1979242_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1979242_33	UniRef90	UniRef90_A0A6N3F6N5	Epidermal cell differentiation inhibitor	NA
UHGV-1979242_33	eggNOG-mapper	665956.HMPREF1032_02954	NA	NA
UHGV-1979242_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1979242_33	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1979242_33	COG	COG2369	NA	NA
UHGV-1979242_33	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-1979242_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1979242_35	UniRef90	UniRef90_A0A6N3F6J3	Phage minor structural protein GP20	NA
UHGV-1979242_35	eggNOG-mapper	665956.HMPREF1032_02952	Phage minor structural protein GP20	NA
UHGV-1979242_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1979242_35	Structural annotation	PF06810	NA	NA
UHGV-1979242_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-1979242_36	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-1979242_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1979242_37	UniRef90	UniRef90_A0A372V0W4	C2H2-type domain-containing protein	NA
UHGV-1979242_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1979242_38	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-1979242_39	PHROG	phrog_3366	NA	unknown function
UHGV-1979242_39	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-1979242_39	Pfam	PF20536	NA	DUF6751
UHGV-1979242_39	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-1979242_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1979242_40	UniRef90	UniRef90_UPI001D0AB638	minor capsid protein	NA
UHGV-1979242_40	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-1979242_40	Structural annotation	PF11114	NA	NA
UHGV-1979242_41	PHROG	phrog_3266	tail completion	connector
UHGV-1979242_41	UniRef90	UniRef90_A0A355D907	Chloramphenicol resistance protein	NA
UHGV-1979242_41	eggNOG-mapper	665956.HMPREF1032_02946	NA	NA
UHGV-1979242_41	Structural annotation	PF12691	NA	NA
UHGV-1979242_42	PHROG	phrog_820	major tail protein	tail
UHGV-1979242_42	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-1979242_42	eggNOG-mapper	665956.HMPREF1032_02945	NA	NA
UHGV-1979242_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1979242_44	PHROG	phrog_4450	NA	unknown function
UHGV-1979242_44	Pfam	PF20378	NA	DUF6673
UHGV-1979242_44	Structural annotation	PF20378	NA	NA
UHGV-1979242_45	PHROG	phrog_706	NA	unknown function
UHGV-1979242_45	UniRef90	UniRef90_A0A6N3F5V9	Bacteriophage Gp15 protein	NA
UHGV-1979242_45	eggNOG-mapper	665956.HMPREF1032_02943	Bacteriophage Gp15 protein	NA
UHGV-1979242_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1979242_45	Structural annotation	PF06854	NA	NA
UHGV-1979242_46	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-1979242_46	UniRef90	UniRef90_G9RTQ8	Tape measure domain-containing protein	NA
UHGV-1979242_46	eggNOG-mapper	665956.HMPREF1032_02942	Phage tail tape measure protein TP901	NA
UHGV-1979242_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1979242_46	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1979242_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1979242_46	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1979242_47	PHROG	phrog_36410	NA	unknown function
UHGV-1979242_47	UniRef90	UniRef90_A0A6N3F5Z2	Phage tail protein	NA
UHGV-1979242_47	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-1979242_47	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1979242_48	PHROG	phrog_538	minor tail protein	tail
UHGV-1979242_48	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1979242_48	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-1979242_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1979242_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1979242_49	PHROG	phrog_9534	head protein	head and packaging
UHGV-1979242_49	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-1979242_49	Structural annotation	PF21567	NA	NA
UHGV-1979242_51	PHROG	phrog_36886	NA	unknown function
UHGV-1979242_51	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1979242_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1979242_52	PHROG	phrog_9116	tail protein	tail
UHGV-1979242_52	UniRef90	UniRef90_G9RTQ1	Collar domain-containing protein (Fragment)	NA
UHGV-1979242_52	eggNOG-mapper	665956.HMPREF1032_02935	PFAM Tail Collar domain protein	NA
UHGV-1979242_52	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1979242_52	COG	COG4675	Phage tail collar domain	NA