UHGV-1979508

Genome information

Genome length 39,403 bps

CDS count 48

Completeness 85.90% (medium-quality)

geNomad score 0.9526

Prediction confidence Confident

Genome information
Genome ID	UHGV-1979508
vOTU ID	vOTU-016066
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023312\|Ga0256721_100209\|provirus_8054_47456
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9526
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.04
Jumbo phage	No

Genome content
Genome length	39,403 bps
GC content	45.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.73%
Average CDS length	757.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1979508_1	KOfam	K05516	cbpA; curved DNA-binding protein	NA
UHGV-1979508_1	PHROG	phrog_14336	NA	unknown function
UHGV-1979508_1	UniRef90	UniRef90_V8BYB0	J domain-containing protein	NA
UHGV-1979508_1	eggNOG-mapper	471875.RUMLAC_02263	DnaJ domain	NA
UHGV-1979508_1	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-1979508_1	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-1979508_2	KOfam	K25307	wzb, etp; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-1979508_2	PHROG	phrog_12429	NA	unknown function
UHGV-1979508_2	UniRef90	UniRef90_V8BXC5	LMWPc domain-containing protein	NA
UHGV-1979508_2	eggNOG-mapper	471875.RUMLAC_02262	Belongs to the low molecular weight phosphotyrosine protein phosphatase family	NA
UHGV-1979508_2	Pfam	PF01451	Low molecular weight phosphotyrosine protein phosphatase	LMWPc
UHGV-1979508_2	COG	COG0394	Protein-tyrosine-phosphatase	NA
UHGV-1979508_2	Structural annotation	PF01451, MF_01624, NF008486, COG0394	NA	NA
UHGV-1979508_3	KOfam	K14059	int; integrase	NA
UHGV-1979508_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1979508_3	UniRef90	UniRef90_B5CS10	Site-specific recombinase, phage integrase family	NA
UHGV-1979508_3	eggNOG-mapper	471875.RUMLAC_02261	Belongs to the 'phage' integrase family	NA
UHGV-1979508_3	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-1979508_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1979508_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1979508_3	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1979508_4	PHROG	phrog_16129	excisionase	integration and excision
UHGV-1979508_4	UniRef90	UniRef90_B5CS09	Excisionase from transposon Tn916	NA
UHGV-1979508_4	eggNOG-mapper	471875.RUMLAC_02260	Excisionase from transposon Tn916	NA
UHGV-1979508_4	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1979508_4	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-1979508_5	eggNOG-mapper	689781.AUJX01000031_gene90	NA	NA
UHGV-1979508_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1979508_7	PHROG	phrog_20388	endolysin	lysis
UHGV-1979508_7	UniRef90	UniRef90_B5CS06	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1979508_7	eggNOG-mapper	471875.RUMLAC_02257	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1979508_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1979508_7	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1979508_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1979508_7	Structural annotation	PF01832, PF01510, MF_04111, NF038016, NF008758, COG1705, COG3023	NA	NA
UHGV-1979508_8	PHROG	phrog_21233	NA	unknown function
UHGV-1979508_8	UniRef90	UniRef90_UPI00189CC356	phage holin family protein	NA
UHGV-1979508_8	eggNOG-mapper	471875.RUMLAC_02256	toxin secretion phage lysis holin	NA
UHGV-1979508_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1979508_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1979508_8	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1979508_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1979508_9	PHROG	phrog_19291	NA	unknown function
UHGV-1979508_9	eggNOG-mapper	658655.HMPREF0988_00102	NA	NA
UHGV-1979508_9	Structural annotation	PF02191, COG3823	NA	NA
UHGV-1979508_10	PHROG	phrog_23052	NA	unknown function
UHGV-1979508_10	eggNOG-mapper	471875.RUMLAC_02253	NA	NA
UHGV-1979508_10	Structural annotation	PF05954, PF16532, NF033848, COG3500	NA	NA
UHGV-1979508_12	KOfam	K05995	pepE; dipeptidase E [EC:3.4.13.21]	NA
UHGV-1979508_12	UniRef90	UniRef90_D4JA41	Peptidase E	NA
UHGV-1979508_12	eggNOG-mapper	718252.FP2_03220	Peptidase family S51	NA
UHGV-1979508_12	Pfam	PF03575	Peptidase family S51	Peptidase_S51
UHGV-1979508_12	COG	COG3340	Peptidase E	NA
UHGV-1979508_12	Structural annotation	PF03575, MF_00510, NF003642, COG3340	NA	NA
UHGV-1979508_13	PHROG	phrog_1194	NA	unknown function
UHGV-1979508_13	eggNOG-mapper	471875.RUMLAC_02250	NA	NA
UHGV-1979508_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1979508_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1979508_14	UniRef90	UniRef90_B5CRZ8	Phage tail tape measure protein, TP901 family	NA
UHGV-1979508_14	eggNOG-mapper	471875.RUMLAC_02249	Phage tail tape measure protein, TP901 family	NA
UHGV-1979508_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1979508_14	Pfam	PF05017	TMP repeat	TMP
UHGV-1979508_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1979508_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1979508_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1979508_15	KOfam	K20156	sgcG; 2-amino-4-deoxychorismate dehydrogenase [EC:1.3.8.16]	NA
UHGV-1979508_15	UniRef90	UniRef90_A0A6N2VY19	NAD(P)H-dependent FMN-containing oxidoreductase YwqN	NA
UHGV-1979508_15	eggNOG-mapper	1280698.AUJS01000060_gene928	NADPH-dependent FMN reductase	NA
UHGV-1979508_15	Pfam	PF03358	NADPH-dependent FMN reductase	FMN_red
UHGV-1979508_15	COG	COG0655	Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase	NA
UHGV-1979508_17	PHROG	phrog_3033	NA	unknown function
UHGV-1979508_17	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-1979508_17	eggNOG-mapper	471875.RUMLAC_02247	NA	NA
UHGV-1979508_18	PHROG	phrog_709	NA	unknown function
UHGV-1979508_18	eggNOG-mapper	471875.RUMLAC_02246	NA	NA
UHGV-1979508_18	Structural annotation	PF11836	NA	NA
UHGV-1979508_19	PHROG	phrog_88	major tail protein	tail
UHGV-1979508_19	UniRef90	UniRef90_UPI001899610E	phage tail protein	NA
UHGV-1979508_19	eggNOG-mapper	471875.RUMLAC_02245	phage major tail protein, phi13 family	NA
UHGV-1979508_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1979508_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1979508_20	PHROG	phrog_78	tail terminator	connector
UHGV-1979508_20	eggNOG-mapper	471875.RUMLAC_02244	NA	NA
UHGV-1979508_20	Structural annotation	PF20765	NA	NA
UHGV-1979508_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1979508_21	UniRef90	UniRef90_UPI0004E26AA1	HK97 gp10 family phage protein	NA
UHGV-1979508_21	eggNOG-mapper	471875.RUMLAC_02243	NA	NA
UHGV-1979508_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1979508_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1979508_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-1979508_22	UniRef90	UniRef90_B5CRZ1	Putative phage head-tail adaptor	NA
UHGV-1979508_22	eggNOG-mapper	471875.RUMLAC_02242	Phage head-tail joining protein	NA
UHGV-1979508_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1979508_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1979508_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1979508_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1979508_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1979508_23	UniRef90	UniRef90_B5CRZ0	Phage DNA packaging protein	NA
UHGV-1979508_23	eggNOG-mapper	471875.RUMLAC_02241	Phage DNA packaging protein	NA
UHGV-1979508_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1979508_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1979508_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1979508_24	PHROG	phrog_35892	NA	unknown function
UHGV-1979508_24	UniRef90	UniRef90_UPI00156FADAD	leucine-rich repeat domain-containing protein	NA
UHGV-1979508_24	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-1979508_24	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1979508_24	COG	COG5492	NA	NA
UHGV-1979508_24	Structural annotation	PF13306, NF041351	NA	NA
UHGV-1979508_25	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1979508_26	eggNOG-mapper	471875.RUMLAC_02238	NA	NA
UHGV-1979508_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1979508_27	UniRef90	UniRef90_B5CRY6	Phage major capsid protein, HK97 family	NA
UHGV-1979508_27	eggNOG-mapper	471875.RUMLAC_02237	Phage major capsid protein, HK97 family	NA
UHGV-1979508_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1979508_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1979508_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1979508_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1979508_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1979508_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1979508_28	UniRef90	UniRef90_B5CRY5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1979508_28	eggNOG-mapper	471875.RUMLAC_02236	Belongs to the peptidase S14 family	NA
UHGV-1979508_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1979508_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1979508_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-1979508_29	UniRef90	UniRef90_UPI001570A48B	phage portal protein	NA
UHGV-1979508_29	eggNOG-mapper	471875.RUMLAC_02235	Phage portal protein, HK97 family	NA
UHGV-1979508_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1979508_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1979508_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1979508_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1979508_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1979508_30	UniRef90	UniRef90_A0A1I7JUW4	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1979508_30	eggNOG-mapper	1235802.C823_01510	Phage Terminase	NA
UHGV-1979508_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1979508_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1979508_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1979508_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1979508_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1979508_31	UniRef90	UniRef90_B5CRY1	Phage terminase, small subunit, P27 family	NA
UHGV-1979508_31	eggNOG-mapper	1235802.C823_01509	Phage terminase, small subunit	NA
UHGV-1979508_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1979508_31	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1979508_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1979508_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1979508_33	eggNOG-mapper	1256908.HMPREF0373_00789	NA	NA
UHGV-1979508_34	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-1979508_34	UniRef90	UniRef90_U2Q2R2	Peptidase_M78 domain-containing protein	NA
UHGV-1979508_34	eggNOG-mapper	1256908.HMPREF0373_00788	IrrE N-terminal-like domain	NA
UHGV-1979508_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1979508_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1979508_35	UniRef90	UniRef90_A0A3E4V5Y9	XRE family transcriptional regulator	NA
UHGV-1979508_35	eggNOG-mapper	1256908.HMPREF0373_00787	Helix-turn-helix XRE-family like proteins	NA
UHGV-1979508_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1979508_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1979508_35	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1979508_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1979508_36	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1979508_36	UniRef90	UniRef90_N2B2Y5	HNH domain-containing protein	NA
UHGV-1979508_36	eggNOG-mapper	1235802.C823_01506	HNH endonuclease	NA
UHGV-1979508_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1979508_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1979508_36	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1979508_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1979508_37	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-1979508_37	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-1979508_37	Pfam	PF07374	NA	DUF1492
UHGV-1979508_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1979508_37	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1979508_38	PHROG	phrog_7024	NA	unknown function
UHGV-1979508_38	eggNOG-mapper	1256908.HMPREF0373_00784	NA	NA
UHGV-1979508_38	AcrCatalog	cluster_1398	NA	NA
UHGV-1979508_39	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1979508_39	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1979508_39	UniRef90	UniRef90_A0A6N7XI13	DEAD/DEAH box helicase	NA
UHGV-1979508_39	eggNOG-mapper	689781.AUJX01000031_gene122	SNF2 family N-terminal domain	NA
UHGV-1979508_39	PADLOC	DpdE_00003	DpdE	DPD
UHGV-1979508_39	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1979508_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1979508_39	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1979508_39	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-1979508_40	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1979508_40	UniRef90	UniRef90_A0A1I7JUP7	VRR-NUC domain-containing protein	NA
UHGV-1979508_40	eggNOG-mapper	1408311.JNJM01000040_gene945	VRR_NUC	NA
UHGV-1979508_40	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1979508_41	PHROG	phrog_8600	NA	unknown function
UHGV-1979508_41	UniRef90	UniRef90_A0A2G3E1U6	YozE_SAM_like domain-containing protein	NA
UHGV-1979508_41	eggNOG-mapper	879308.HMPREF9130_0832	YozE SAM-like fold	NA
UHGV-1979508_41	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-1979508_41	Structural annotation	PF06855, MF_01538, NF010193, COG4479	NA	NA
UHGV-1979508_42	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1979508_42	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1979508_42	UniRef90	UniRef90_A0A6N7X2L4	DNA primase	NA
UHGV-1979508_42	eggNOG-mapper	1235802.C823_01499	D5 N terminal like	NA
UHGV-1979508_42	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1979508_42	Pfam	PF19263	NA	DUF5906
UHGV-1979508_42	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1979508_42	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1979508_42	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-1979508_43	PHROG	phrog_408	NA	unknown function
UHGV-1979508_43	UniRef90	UniRef90_A0A414D4B9	DNA ligase	NA
UHGV-1979508_43	eggNOG-mapper	1408311.JNJM01000040_gene942	NA	NA
UHGV-1979508_44	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1979508_44	UniRef90	UniRef90_A0A6N7X2N8	NA	NA
UHGV-1979508_44	eggNOG-mapper	1235802.C823_01496	NA	NA
UHGV-1979508_44	Pfam	PF10926	NA	DUF2800
UHGV-1979508_44	COG	COG2887	RecB family exonuclease	NA
UHGV-1979508_44	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1979508_45	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1979508_45	UniRef90	UniRef90_A0A396Q0J8	NA	NA
UHGV-1979508_45	eggNOG-mapper	1408311.JNJM01000031_gene2487	NA	NA
UHGV-1979508_45	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1979508_45	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1979508_46	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1979508_46	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1979508_46	UniRef90	UniRef90_A0A173WDY8	DNA polymerase I, thermostable	NA
UHGV-1979508_46	eggNOG-mapper	471875.RUMLAC_02218	NA	NA
UHGV-1979508_46	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1979508_46	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1979508_46	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA