UHGV-1980172

Genome information

Genome length 35,184 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9666

Prediction confidence Confident

Genome information
Genome ID	UHGV-1980172
vOTU ID	vOTU-067636
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014793\|Ga0134407_1000081\|provirus_126_35309
BioSample	SAMN03922483
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9666
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.58
Jumbo phage	No

Genome content
Genome length	35,184 bps
GC content	53.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.30%
Average CDS length	718.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1980172_2	Structural annotation	PF18654, TIGR00606, COG0268	NA	NA
UHGV-1980172_4	KOfam	K18431	legF, ptmB; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]	NA
UHGV-1980172_4	UniRef90	UniRef90_A0A8F1GPN3	NTP transferase domain-containing protein	NA
UHGV-1980172_4	eggNOG-mapper	1121440.AUMA01000002_gene2113	PFAM acylneuraminate cytidylyltransferase	NA
UHGV-1980172_4	Pfam	PF02348	Cytidylyltransferase	CTP_transf_3
UHGV-1980172_4	COG	COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	NA
UHGV-1980172_5	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA
UHGV-1980172_6	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-1980172_12	Structural annotation	PF21190, TIGR03511, COG4935	NA	NA
UHGV-1980172_13	UniRef90	UniRef90_A0A6J5N5S1	Major capsid protein	NA
UHGV-1980172_13	eggNOG-mapper	521674.Plim_2126	NA	NA
UHGV-1980172_13	Structural annotation	PF20911, MF_04133, NF041162, COG4397	NA	NA
UHGV-1980172_14	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-1980172_14	eggNOG-mapper	794903.OPIT5_08310	P22 coat protein - gene protein 5	NA
UHGV-1980172_14	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-1980172_16	PHROG	phrog_113	portal protein	head and packaging
UHGV-1980172_16	UniRef90	UniRef90_A0A8F1KYQ2	NA	NA
UHGV-1980172_16	eggNOG-mapper	622637.KE124774_gene3341	NA	NA
UHGV-1980172_16	Pfam	PF06074	NA	DUF935
UHGV-1980172_16	COG	COG4383	NA	NA
UHGV-1980172_17	PHROG	phrog_315	endolysin	lysis
UHGV-1980172_17	UniRef90	UniRef90_A0A2N8HHC6	PG_binding_3 domain-containing protein	NA
UHGV-1980172_17	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-1980172_17	COG	COG3926	Lysozyme family protein	NA
UHGV-1980172_17	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-1980172_18	UniRef90	UniRef90_UPI001CA5B655	NA	NA
UHGV-1980172_18	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-1980172_18	Structural annotation	PF11195	NA	NA
UHGV-1980172_20	UniRef90	UniRef90_UPI001EDF593B	NA	NA
UHGV-1980172_22	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-1980172_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1980172_23	UniRef90	UniRef90_A0A1C7PDG0	p-loop containing nucleoside triphosphate hydrolase	NA
UHGV-1980172_23	eggNOG-mapper	997346.HMPREF9374_1123	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-1980172_23	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1980172_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-1980172_24	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-1980172_24	UniRef90	UniRef90_A0A8I0N2P9	Terminase small subunit protein	NA
UHGV-1980172_24	eggNOG-mapper	1072685.IX83_07125	NA	NA
UHGV-1980172_24	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-1980172_26	UniRef90	UniRef90_A0A4Q5IVQ1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-1980172_26	eggNOG-mapper	1123274.KB899418_gene2332	cell adhesion	NA
UHGV-1980172_26	COG	COG2369	NA	NA
UHGV-1980172_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1980172_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1980172_28	UniRef90	UniRef90_A0A8F1KFQ8	DNA helicase	NA
UHGV-1980172_28	eggNOG-mapper	349741.Amuc_1377	DnaB-like helicase C terminal domain	NA
UHGV-1980172_28	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1980172_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1980172_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-1980172_28	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1980172_29	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1980172_29	eggNOG-mapper	402626.Rpic_2326	ROK family	NA
UHGV-1980172_29	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-1980172_29	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-1980172_30	PHROG	phrog_631	NA	unknown function
UHGV-1980172_30	eggNOG-mapper	82995.CR62_16630	NA	NA
UHGV-1980172_30	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1980172_31	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1980172_31	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1980172_31	UniRef90	UniRef90_R7DZF8	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1980172_31	eggNOG-mapper	318586.Pden_0261	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1980172_31	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-1980172_31	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1980172_31	COG	COG0338	DNA-adenine methylase	NA
UHGV-1980172_31	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-1980172_34	Structural annotation	PF17516	NA	NA
UHGV-1980172_35	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-1980172_35	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1980172_35	UniRef90	UniRef90_A0A2N8HIX1	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1980172_35	eggNOG-mapper	367299.JOEE01000001_gene1963	NA	NA
UHGV-1980172_35	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-1980172_35	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1980172_36	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-1980172_36	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1980172_36	UniRef90	UniRef90_A0A2N8HIW0	YqaJ domain-containing protein	NA
UHGV-1980172_36	eggNOG-mapper	696125.BARCL_1198	YqaJ-like viral recombinase domain	NA
UHGV-1980172_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1980172_36	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-1980172_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1980172_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1980172_37	UniRef90	UniRef90_A0A8F1KRS7	Recombinase RecT	NA
UHGV-1980172_37	eggNOG-mapper	1410632.JHWW01000022_gene2713	RecT family	NA
UHGV-1980172_37	Pfam	PF03837	RecT family	RecT
UHGV-1980172_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1980172_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1980172_37	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1980172_38	Structural annotation	PF14603, COG5475	NA	NA
UHGV-1980172_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1980172_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1980172_43	UniRef90	UniRef90_A0A8F1HR44	S24/S26 family peptidase	NA
UHGV-1980172_43	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-1980172_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1980172_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1980172_43	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-1980172_44	UniRef90	UniRef90_A0A857ZXF3	XRE family transcriptional regulator	NA
UHGV-1980172_44	Structural annotation	PF21291, TIGR00270, COG1476	NA	NA
UHGV-1980172_45	PHROG	phrog_2384	NA	unknown function
UHGV-1980172_45	UniRef90	UniRef90_A0A256C2K1	P63C domain-containing protein	NA
UHGV-1980172_45	eggNOG-mapper	1071679.BG57_03755	P63C domain	NA
UHGV-1980172_45	Pfam	PF10546	P63C domain	P63C
UHGV-1980172_45	Structural annotation	PF10546	NA	NA
UHGV-1980172_47	KOfam	K14059	int; integrase	NA
UHGV-1980172_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1980172_47	UniRef90	UniRef90_A0A7G6DT43	Tyrosine-type recombinase/integrase	NA
UHGV-1980172_47	eggNOG-mapper	382464.ABSI01000016_gene641	viral genome integration into host DNA	NA
UHGV-1980172_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1980172_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA