UHGV-1980302

Genome information

Genome length 22,801 bps

CDS count 31

Completeness 59.38% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-1980302
vOTU ID	vOTU-041289
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014938\|Ga0134444_100390
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.71
Jumbo phage	No

Genome content
Genome length	22,801 bps
GC content	46.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.66%
Average CDS length	693.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1980302_2	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1980302_2	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-1980302_2	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1980302_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1980302_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1980302_3	UniRef90	UniRef90_A0A7X1LVW3	AAA family ATPase	NA
UHGV-1980302_3	eggNOG-mapper	1121874.KB892380_gene1592	Participates in initiation and elongation during chromosome replication	NA
UHGV-1980302_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1980302_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1980302_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-1980302_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1980302_7	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1980302_7	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1980302_7	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1980302_7	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-1980302_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1980302_8	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-1980302_8	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-1980302_8	Structural annotation	PF02996	NA	NA
UHGV-1980302_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1980302_10	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1980302_10	UniRef90	UniRef90_UPI0001F01BB6	terminase small subunit	NA
UHGV-1980302_10	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-1980302_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1980302_10	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1980302_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1980302_11	PHROG	phrog_10250	NA	unknown function
UHGV-1980302_11	UniRef90	UniRef90_A0A1C6HKR0	Phage terminase, large subunit, PBSX family	NA
UHGV-1980302_11	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-1980302_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-1980302_11	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1980302_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-1980302_12	UniRef90	UniRef90_UPI001AA0FCED	capsid protein	NA
UHGV-1980302_12	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1980302_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1980302_13	PHROG	phrog_25639	NA	unknown function
UHGV-1980302_13	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-1980302_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1980302_14	eggNOG-mapper	483218.BACPEC_01159	NA	NA
UHGV-1980302_14	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-1980302_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1980302_15	UniRef90	UniRef90_A0A373A8K2	Minor capsid protein	NA
UHGV-1980302_15	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-1980302_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1980302_15	Pfam	PF21814	NA	DUF6883
UHGV-1980302_15	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-1980302_16	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-1980302_16	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-1980302_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1980302_17	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-1980302_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-1980302_18	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-1980302_18	eggNOG-mapper	483218.BACPEC_01155	NA	NA
UHGV-1980302_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1980302_19	PHROG	phrog_1378	NA	unknown function
UHGV-1980302_19	eggNOG-mapper	1298920.KI911353_gene4849	NA	NA
UHGV-1980302_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1980302_20	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-1980302_21	PHROG	phrog_8710	NA	unknown function
UHGV-1980302_21	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-1980302_21	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1980302_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1980302_22	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-1980302_23	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1980302_23	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-1980302_23	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-1980302_23	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1980302_23	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1980302_24	PHROG	phrog_820	major tail protein	tail
UHGV-1980302_24	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-1980302_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1980302_25	PHROG	phrog_8300	NA	unknown function
UHGV-1980302_25	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-1980302_26	PHROG	phrog_8355	NA	unknown function
UHGV-1980302_26	UniRef90	UniRef90_UPI001F1300CC	bacteriophage Gp15 family protein	NA
UHGV-1980302_26	eggNOG-mapper	585501.HMPREF6123_0827	NA	NA
UHGV-1980302_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1980302_27	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-1980302_27	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1980302_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1980302_27	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1980302_28	PHROG	phrog_1194	NA	unknown function
UHGV-1980302_28	eggNOG-mapper	1151292.QEW_2422	NA	NA
UHGV-1980302_28	Pfam	PF20458	NA	DUF6711
UHGV-1980302_28	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1980302_29	PHROG	phrog_6616	tail protein	tail
UHGV-1980302_29	UniRef90	UniRef90_UPI00085BC306	tail fiber domain-containing protein	NA
UHGV-1980302_29	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-1980302_29	COG	COG4926	Phage-related protein	NA
UHGV-1980302_31	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1980302_31	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1980302_31	eggNOG-mapper	1226325.HMPREF1548_01551	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1980302_31	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1980302_31	Pfam	PF16255	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL_lke
UHGV-1980302_31	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA