UHGV-1981043

Genome information

Genome length 29,794 bps

CDS count 40

Completeness 77.78% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1981043
vOTU ID	vOTU-029698
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014936\|Ga0169833_100016\|provirus_3_33733
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.06
Jumbo phage	No

Genome content
Genome length	29,794 bps
GC content	38.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.35%
Average CDS length	682.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1981043_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1981043_2	PHROG	phrog_3502	NA	unknown function
UHGV-1981043_2	UniRef90	UniRef90_A0A174J3W3	LexA repressor	NA
UHGV-1981043_2	eggNOG-mapper	545697.HMPREF0216_00360	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1981043_2	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1981043_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1981043_2	Structural annotation	PF01726, MF_00732, NF006812, COG3388	NA	NA
UHGV-1981043_3	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1981043_3	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-1981043_4	PHROG	phrog_8684	NA	unknown function
UHGV-1981043_4	UniRef90	UniRef90_A0A415S8F9	YopX domain-containing protein	NA
UHGV-1981043_4	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-1981043_4	Pfam	PF09643	YopX protein	YopX
UHGV-1981043_4	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1981043_5	PHROG	phrog_419	NA	unknown function
UHGV-1981043_5	eggNOG-mapper	762660.E5EYD7_9CAUD	NA	NA
UHGV-1981043_5	Structural annotation	PF14083	NA	NA
UHGV-1981043_6	PHROG	phrog_15198	NA	unknown function
UHGV-1981043_6	UniRef90	UniRef90_UPI001BC83939	NA	NA
UHGV-1981043_6	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-1981043_6	Pfam	PF04448	NA	DUF551
UHGV-1981043_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1981043_7	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1981043_7	UniRef90	UniRef90_UPI0011825B4A	DNA cytosine methyltransferase	NA
UHGV-1981043_7	eggNOG-mapper	1235798.C817_01880	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1981043_7	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1981043_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1981043_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1981043_7	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1981043_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1981043_8	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-1981043_8	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-1981043_8	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1981043_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1981043_9	UniRef90	UniRef90_UPI001C116A0F	helix-turn-helix domain-containing protein	NA
UHGV-1981043_9	eggNOG-mapper	1128111.HMPREF0870_00982	Protein conserved in bacteria	NA
UHGV-1981043_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1981043_9	COG	COG1426	NA	NA
UHGV-1981043_9	Structural annotation	PF13560, MF_00535, NF041951, COG1513	NA	NA
UHGV-1981043_10	PHROG	phrog_87	metallo-protease	other
UHGV-1981043_10	UniRef90	UniRef90_UPI00191FA2AD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1981043_10	eggNOG-mapper	997296.PB1_16109	NA	NA
UHGV-1981043_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1981043_10	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1981043_10	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-1981043_11	eggNOG-mapper	1123288.SOV_6c00720	NA	NA
UHGV-1981043_12	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1981043_12	UniRef90	UniRef90_UPI0011DD9234	phage terminase small subunit	NA
UHGV-1981043_12	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-1981043_12	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1981043_12	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1981043_12	COG	COG5484	NA	NA
UHGV-1981043_12	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-1981043_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1981043_13	PHROG	phrog_10250	NA	unknown function
UHGV-1981043_13	UniRef90	UniRef90_UPI0011DD38A6	PBSX family phage terminase large subunit	NA
UHGV-1981043_13	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1981043_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1981043_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1981043_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-1981043_13	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1981043_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-1981043_14	UniRef90	UniRef90_R9N3I1	SPP1 family phage portal protein	NA
UHGV-1981043_14	eggNOG-mapper	1235800.C819_00489	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1981043_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1981043_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1981043_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1981043_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1981043_15	UniRef90	UniRef90_A0A415Z1K6	Phage head morphogenesis protein	NA
UHGV-1981043_15	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-1981043_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1981043_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1981043_15	COG	COG2369	NA	NA
UHGV-1981043_16	PHROG	phrog_3711	NA	unknown function
UHGV-1981043_16	eggNOG-mapper	411469.EUBHAL_01002	NA	NA
UHGV-1981043_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1981043_17	UniRef90	UniRef90_UPI001594DC25	NA	NA
UHGV-1981043_17	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-1981043_17	Pfam	PF14265	NA	DUF4355
UHGV-1981043_17	Structural annotation	PF14265	NA	NA
UHGV-1981043_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-1981043_18	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-1981043_18	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-1981043_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1981043_19	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1981043_19	Structural annotation	PF07498	NA	NA
UHGV-1981043_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1981043_20	UniRef90	UniRef90_UPI001D06FE42	phage head-tail connector protein	NA
UHGV-1981043_20	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-1981043_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1981043_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1981043_21	PHROG	phrog_2168	NA	unknown function
UHGV-1981043_21	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-1981043_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1981043_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1981043_22	UniRef90	UniRef90_D3ATL6	Phage protein, HK97 gp10 family	NA
UHGV-1981043_22	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1981043_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1981043_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1981043_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1981043_23	PHROG	phrog_78	tail terminator	connector
UHGV-1981043_23	eggNOG-mapper	1280689.AUJC01000003_gene971	NA	NA
UHGV-1981043_23	Structural annotation	PF05657	NA	NA
UHGV-1981043_24	PHROG	phrog_158	major tail protein	tail
UHGV-1981043_24	UniRef90	UniRef90_UPI00047F0744	tail protein	NA
UHGV-1981043_24	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-1981043_24	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1981043_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1981043_25	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1981043_25	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-1981043_25	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-1981043_25	Pfam	PF19591	NA	DUF6096
UHGV-1981043_25	Structural annotation	PF19591	NA	NA
UHGV-1981043_26	PHROG	phrog_2066	NA	unknown function
UHGV-1981043_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1981043_27	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-1981043_27	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-1981043_27	COG	COG5283	Phage-related tail protein	NA
UHGV-1981043_28	PHROG	phrog_1194	NA	unknown function
UHGV-1981043_28	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-1981043_28	Pfam	PF20458	NA	DUF6711
UHGV-1981043_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1981043_29	PHROG	phrog_6616	tail protein	tail
UHGV-1981043_29	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-1981043_29	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-1981043_29	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1981043_30	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1981043_30	PHROG	phrog_14030	NA	unknown function
UHGV-1981043_30	UniRef90	UniRef90_A0A4R4FEU7	NlpC/P60 domain-containing protein	NA
UHGV-1981043_30	eggNOG-mapper	1163671.JAGI01000002_gene984	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1981043_30	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1981043_30	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1981043_30	Structural annotation	PF05382, NF033742, COG0791	NA	NA
UHGV-1981043_31	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1981043_31	PHROG	phrog_25888	NA	unknown function
UHGV-1981043_31	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-1981043_31	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1981043_32	PHROG	phrog_21765	NA	unknown function
UHGV-1981043_32	eggNOG-mapper	1235793.C809_01950	Phage tail-collar fibre protein	NA
UHGV-1981043_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1981043_33	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-1981043_34	PHROG	phrog_16164	NA	unknown function
UHGV-1981043_34	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-1981043_34	Pfam	PF19789	NA	DUF6273
UHGV-1981043_35	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1981043_35	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1981043_35	UniRef90	UniRef90_R9JMD6	Reverse transcriptase domain-containing protein	NA
UHGV-1981043_35	eggNOG-mapper	397291.C804_00976	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1981043_35	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1981043_35	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1981043_35	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1981043_35	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1981043_36	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-1981043_37	PHROG	phrog_937	hemolysin	other
UHGV-1981043_38	PHROG	phrog_443	holin	lysis
UHGV-1981043_38	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-1981043_38	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-1981043_38	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1981043_38	Structural annotation	PF16945	NA	NA
UHGV-1981043_39	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1981043_39	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-1981043_39	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-1981043_39	Structural annotation	PF14359	NA	NA
UHGV-1981043_40	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1981043_40	PHROG	phrog_435	endolysin	lysis
UHGV-1981043_40	UniRef90	UniRef90_A0A6N2UUF0	Autolysin	NA
UHGV-1981043_40	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-1981043_40	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1981043_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1981043_40	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA