UHGV-1981582

Genome information

Genome length 38,106 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-1981582
vOTU ID	vOTU-069107
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014788\|Ga0134381_1000169\|provirus_18588_56693
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.58
Jumbo phage	No

Genome content
Genome length	38,106 bps
GC content	58.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.21%
Average CDS length	593.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1981582_1	KOfam	K14059	int; integrase	NA
UHGV-1981582_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1981582_1	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-1981582_1	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-1981582_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1981582_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1981582_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1981582_2	PHROG	phrog_37750	NA	unknown function
UHGV-1981582_2	UniRef90	UniRef90_UPI001D06EB78	NA	NA
UHGV-1981582_2	eggNOG-mapper	1087481.AGFX01000037_gene4346	NA	NA
UHGV-1981582_2	Structural annotation	PF16146, MF_00867, COG5007	NA	NA
UHGV-1981582_3	PHROG	phrog_87	metallo-protease	other
UHGV-1981582_3	UniRef90	UniRef90_UPI00195AE3BC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1981582_3	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-1981582_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1981582_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1981582_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1981582_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1981582_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1981582_4	UniRef90	UniRef90_UPI00195603C9	helix-turn-helix domain-containing protein	NA
UHGV-1981582_4	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-1981582_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1981582_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1981582_4	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1981582_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1981582_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1981582_5	UniRef90	UniRef90_A0A2K9P4T7	Helix-turn-helix domain protein	NA
UHGV-1981582_5	eggNOG-mapper	1226325.HMPREF1548_00112	Helix-turn-helix XRE-family like proteins	NA
UHGV-1981582_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1981582_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1981582_6	PHROG	phrog_6058	NA	unknown function
UHGV-1981582_6	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-1981582_6	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1981582_9	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1981582_9	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-1981582_9	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-1981582_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1981582_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1981582_9	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-1981582_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1981582_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1981582_10	UniRef90	UniRef90_A0A1Y4C806	DNA helicase	NA
UHGV-1981582_10	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-1981582_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1981582_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1981582_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-1981582_10	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-1981582_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1981582_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1981582_11	UniRef90	UniRef90_UPI001F3C1DB2	ParA family protein	NA
UHGV-1981582_11	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1981582_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-1981582_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1981582_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1981582_12	PHROG	phrog_15609	NA	unknown function
UHGV-1981582_12	UniRef90	UniRef90_UPI001246A313	NA	NA
UHGV-1981582_12	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-1981582_12	Pfam	PF11300	NA	DUF3102
UHGV-1981582_12	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1981582_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1981582_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1981582_14	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-1981582_14	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-1981582_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1981582_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1981582_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1981582_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1981582_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1981582_15	PHROG	phrog_4433	NA	unknown function
UHGV-1981582_15	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-1981582_15	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1981582_15	Structural annotation	PF12120, NF000318	NA	NA
UHGV-1981582_16	eggNOG-mapper	552398.HMPREF0866_03131	NA	NA
UHGV-1981582_18	PHROG	phrog_3777	NA	unknown function
UHGV-1981582_18	UniRef90	UniRef90_UPI0019572B07	NA	NA
UHGV-1981582_18	eggNOG-mapper	994573.T472_0204795	NA	NA
UHGV-1981582_18	Pfam	PF12957	NA	DUF3846
UHGV-1981582_18	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-1981582_19	PHROG	phrog_7704	NA	unknown function
UHGV-1981582_19	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-1981582_19	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-1981582_19	Pfam	PF04448	NA	DUF551
UHGV-1981582_19	Structural annotation	PF04448	NA	NA
UHGV-1981582_20	PHROG	phrog_38832	NA	unknown function
UHGV-1981582_20	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1981582_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1981582_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1981582_27	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-1981582_27	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1981582_28	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-1981582_28	Structural annotation	PF14205	NA	NA
UHGV-1981582_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1981582_29	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-1981582_29	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-1981582_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1981582_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1981582_30	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-1981582_30	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1981582_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1981582_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1981582_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1981582_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1981582_30	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-1981582_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-1981582_31	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-1981582_31	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-1981582_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1981582_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1981582_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1981582_31	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1981582_32	KOfam	K06904	NA	NA
UHGV-1981582_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1981582_32	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-1981582_32	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-1981582_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1981582_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1981582_32	COG	COG3740	Phage head maturation protease	NA
UHGV-1981582_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1981582_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-1981582_33	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-1981582_33	eggNOG-mapper	913865.DOT_5633	phage major capsid protein, HK97 family	NA
UHGV-1981582_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1981582_33	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1981582_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1981582_33	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-1981582_33	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1981582_34	PHROG	phrog_2550	NA	unknown function
UHGV-1981582_34	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-1981582_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1981582_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1981582_35	UniRef90	UniRef90_A0A0J0VAS0	Phage head-tail adaptor	NA
UHGV-1981582_35	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-1981582_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1981582_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1981582_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1981582_36	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-1981582_36	Structural annotation	PF05657	NA	NA
UHGV-1981582_37	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-1981582_37	Structural annotation	TIGR01725	NA	NA
UHGV-1981582_38	PHROG	phrog_88	major tail protein	tail
UHGV-1981582_38	eggNOG-mapper	1235793.C809_01925	phage major tail protein, phi13 family	NA
UHGV-1981582_38	COG	COG5492	NA	NA
UHGV-1981582_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1981582_39	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-1981582_40	PHROG	phrog_23464	NA	unknown function
UHGV-1981582_40	UniRef90	UniRef90_A0A231NVG0	Phage tail protein	NA
UHGV-1981582_40	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-1981582_40	COG	COG5412	Phage-related protein	NA
UHGV-1981582_40	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1981582_41	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-1981582_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1981582_42	PHROG	phrog_13879	NA	unknown function
UHGV-1981582_42	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1981582_42	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1981582_43	Structural annotation	PF00354	NA	NA
UHGV-1981582_44	eggNOG-mapper	1226322.HMPREF1545_02881	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1981582_44	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1981582_46	UniRef90	UniRef90_A0A8J6JAX9	XkdX family protein	NA
UHGV-1981582_46	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1981582_47	PHROG	phrog_37604	NA	unknown function
UHGV-1981582_47	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-1981582_48	PHROG	phrog_1129	holin	lysis
UHGV-1981582_48	UniRef90	UniRef90_UPI001D084907	phage holin family protein	NA
UHGV-1981582_48	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1981582_48	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1981582_48	Structural annotation	PF06946	NA	NA
UHGV-1981582_50	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1981582_50	PHROG	phrog_435	endolysin	lysis
UHGV-1981582_50	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1981582_50	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1981582_50	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1981582_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1981582_50	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-1981582_51	KOfam	K14059	int; integrase	NA
UHGV-1981582_51	PHROG	phrog_1	integrase	integration and excision
UHGV-1981582_51	UniRef90	UniRef90_A0A1Y4C6T3	Tyr recombinase domain-containing protein	NA
UHGV-1981582_51	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1981582_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1981582_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1981582_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1981582_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1981582_52	UniRef90	UniRef90_UPI000829D46F	NA	NA
UHGV-1981582_52	eggNOG-mapper	1232453.BAIF02000014_gene3186	NA	NA
UHGV-1981582_53	PHROG	phrog_38135	NA	unknown function
UHGV-1981582_53	UniRef90	UniRef90_UPI0018F46365	NA	NA
UHGV-1981582_53	eggNOG-mapper	1408303.JNJJ01000047_gene2868	NA	NA
UHGV-1981582_53	Pfam	PF14020	NA	DUF4236
UHGV-1981582_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1981582_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1981582_54	UniRef90	UniRef90_UPI0013DDB973	XRE family transcriptional regulator	NA
UHGV-1981582_54	eggNOG-mapper	349161.Dred_1183	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1981582_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1981582_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1981582_55	UniRef90	UniRef90_A0A7X5E0G0	XRE family transcriptional regulator	NA
UHGV-1981582_55	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-1981582_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1981582_55	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1981582_57	Structural annotation	PF12728, NF040990, COG3311	NA	NA