UHGV-1981853

Genome information

Genome length 30,749 bps

CDS count 39

Completeness 72.42% (medium-quality)

geNomad score 0.9686

Prediction confidence Confident

Genome information
Genome ID	UHGV-1981853
vOTU ID	vOTU-022665
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014752\|Ga0169821_100488
BioSample	SAMEA2580233
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9686
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.17
Jumbo phage	No

Genome content
Genome length	30,749 bps
GC content	28.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.32%
Average CDS length	713.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1981853_1	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1981853_1	UniRef90	UniRef90_UPI001F36C802	ORF6C domain-containing protein	NA
UHGV-1981853_1	eggNOG-mapper	1582154.A0A0A8WJ22_9CAUD	ORF6N domain	NA
UHGV-1981853_1	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1981853_1	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1981853_1	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1981853_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1981853_2	UniRef90	UniRef90_UPI00195787FA	NA	NA
UHGV-1981853_2	eggNOG-mapper	1408823.AXUS01000025_gene2668	sigma factor activity	NA
UHGV-1981853_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1981853_2	Structural annotation	PF08281, NF008895, COG1595	NA	NA
UHGV-1981853_3	eggNOG-mapper	431943.CKL_1820	NA	NA
UHGV-1981853_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1981853_4	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-1981853_4	UniRef90	UniRef90_UPI00093A4A9C	XRE family transcriptional regulator	NA
UHGV-1981853_4	eggNOG-mapper	641107.CDLVIII_0963	IrrE N-terminal-like domain	NA
UHGV-1981853_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1981853_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1981853_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1981853_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1981853_4	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-1981853_5	PHROG	phrog_4803	NA	unknown function
UHGV-1981853_6	PHROG	phrog_11624	NA	unknown function
UHGV-1981853_7	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1981853_7	UniRef90	UniRef90_A0A8H0Z246	Helix-turn-helix domain-containing protein	NA
UHGV-1981853_7	eggNOG-mapper	1204534.J9QD10_9CAUD	Homeodomain-like domain	NA
UHGV-1981853_7	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1981853_7	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1981853_7	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1981853_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1981853_8	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1981853_8	UniRef90	UniRef90_A0A8H0Z260	PBSX family phage terminase large subunit	NA
UHGV-1981853_8	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-1981853_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1981853_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1981853_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-1981853_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1981853_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-1981853_9	UniRef90	UniRef90_UPI001431B561	phage portal protein	NA
UHGV-1981853_9	eggNOG-mapper	1123250.KB908417_gene647	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1981853_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1981853_9	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1981853_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1981853_10	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1981853_10	UniRef90	UniRef90_UPI001EED4F25	minor capsid protein	NA
UHGV-1981853_10	eggNOG-mapper	1283341.Q24LJ3_BPPCD	Phage Mu protein F like protein	NA
UHGV-1981853_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1981853_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1981853_10	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1981853_11	PHROG	phrog_1233	NA	unknown function
UHGV-1981853_11	eggNOG-mapper	1151292.QEW_4538	NA	NA
UHGV-1981853_12	PHROG	phrog_4502	NA	unknown function
UHGV-1981853_12	eggNOG-mapper	1151292.QEW_3256	NA	NA
UHGV-1981853_13	PHROG	phrog_4166	NA	unknown function
UHGV-1981853_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1981853_14	UniRef90	UniRef90_UPI00103335DC	NA	NA
UHGV-1981853_14	eggNOG-mapper	1443125.Z962_07915	NA	NA
UHGV-1981853_14	Pfam	PF14265	NA	DUF4355
UHGV-1981853_14	Structural annotation	PF14265	NA	NA
UHGV-1981853_15	PHROG	phrog_267	major head protein	head and packaging
UHGV-1981853_15	UniRef90	UniRef90_I7ILV4	Phage coat protein gp6	NA
UHGV-1981853_15	eggNOG-mapper	1118063.I7J4F9_9CAUD	viral capsid	NA
UHGV-1981853_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1981853_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1981853_16	UniRef90	UniRef90_UPI000980113D	phage head-tail connector protein	NA
UHGV-1981853_16	eggNOG-mapper	318464.IO99_00595	NA	NA
UHGV-1981853_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1981853_17	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1981853_17	eggNOG-mapper	1151292.QEW_0419	NA	NA
UHGV-1981853_17	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1981853_18	UniRef90	UniRef90_UPI001033B6AD	HK97 gp10 family phage protein	NA
UHGV-1981853_18	eggNOG-mapper	1243664.CAVL020000019_gene3760	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1981853_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1981853_19	PHROG	phrog_525	NA	unknown function
UHGV-1981853_19	Pfam	PF20765	NA	DUF6838
UHGV-1981853_19	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-1981853_20	PHROG	phrog_1480	tail sheath	tail
UHGV-1981853_20	UniRef90	UniRef90_UPI00102787E3	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1981853_20	eggNOG-mapper	1151292.QEW_1746	Phage tail sheath C-terminal domain	NA
UHGV-1981853_20	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1981853_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1981853_20	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1981853_21	PHROG	phrog_365	tail protein	tail
UHGV-1981853_21	UniRef90	UniRef90_UPI000D64F44C	phage tail tube protein	NA
UHGV-1981853_21	eggNOG-mapper	1291050.JAGE01000001_gene2928	Phage tail tube protein	NA
UHGV-1981853_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1981853_21	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1981853_22	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1981853_22	UniRef90	UniRef90_UPI0010252351	XkdN-like protein	NA
UHGV-1981853_22	eggNOG-mapper	1211817.CCAT010000008_gene949	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1981853_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1981853_22	Structural annotation	PF08890	NA	NA
UHGV-1981853_23	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1981853_23	UniRef90	UniRef90_UPI000D64E88F	phage tail tape measure protein	NA
UHGV-1981853_23	eggNOG-mapper	259901.Q6R868_9CAUD	peptidoglycan catabolic process	NA
UHGV-1981853_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1981853_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1981853_25	PHROG	phrog_738	NA	unknown function
UHGV-1981853_25	UniRef90	UniRef90_T3D7L9	Putative membrane protein	NA
UHGV-1981853_26	eggNOG-mapper	1476973.JMMB01000007_gene1752	NA	NA
UHGV-1981853_27	PHROG	phrog_8614	NA	unknown function
UHGV-1981853_27	UniRef90	UniRef90_UPI001026D76F	P-loop NTPase fold protein	NA
UHGV-1981853_27	eggNOG-mapper	1345695.CLSA_c29350	KAP family P-loop domain	NA
UHGV-1981853_27	PADLOC	PifA	PifA	Abi
UHGV-1981853_27	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-1981853_27	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-1981853_27	Structural annotation	PF07693, MF_01509, NF041923, COG4928	NA	NA
UHGV-1981853_28	PHROG	phrog_380	endolysin	lysis
UHGV-1981853_28	UniRef90	UniRef90_UPI000D65A925	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1981853_28	eggNOG-mapper	1437363.A0A090C751_9CAUD	lytic transglycosylase activity	NA
UHGV-1981853_28	Pfam	PF01476	LysM domain	LysM
UHGV-1981853_28	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-1981853_29	PHROG	phrog_1664	NA	unknown function
UHGV-1981853_29	eggNOG-mapper	1582156.A0A0A8WIF1_9CAUD	NA	NA
UHGV-1981853_31	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-1981853_31	PHROG	phrog_400	tail protein	tail
UHGV-1981853_31	UniRef90	UniRef90_UPI00097FFE8D	NlpC/P60 family protein	NA
UHGV-1981853_31	eggNOG-mapper	1522092.A0A090DCQ7_9CAUD	amidase activity	NA
UHGV-1981853_31	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1981853_31	Pfam	PF10844	NA	DUF2577
UHGV-1981853_31	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-1981853_32	PHROG	phrog_120	baseplate protein	tail
UHGV-1981853_32	UniRef90	UniRef90_A0A450CSB9	XkdS-like protein	NA
UHGV-1981853_32	eggNOG-mapper	272563.CD630_13700	NA	NA
UHGV-1981853_32	Pfam	PF10934	NA	DUF2634
UHGV-1981853_32	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1981853_33	PHROG	phrog_6	baseplate protein	tail
UHGV-1981853_33	UniRef90	UniRef90_A0A090EU53	Baseplate_J domain-containing protein	NA
UHGV-1981853_33	eggNOG-mapper	1437363.A0A090C6U6_9CAUD	Baseplate J-like protein	NA
UHGV-1981853_33	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1981853_33	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1981853_34	PHROG	phrog_521	tail protein	tail
UHGV-1981853_34	UniRef90	UniRef90_A0A450CSC2	NA	NA
UHGV-1981853_34	eggNOG-mapper	1151292.QEW_0433	NA	NA
UHGV-1981853_34	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1981853_34	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1981853_35	PHROG	phrog_2137	tail fiber protein	tail
UHGV-1981853_35	UniRef90	UniRef90_UPI0007BBC632	phage tail protein	NA
UHGV-1981853_35	eggNOG-mapper	1151292.QEW_0434	Phage tail-collar fibre protein	NA
UHGV-1981853_35	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-1981853_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1981853_35	Structural annotation	PF12571	NA	NA
UHGV-1981853_36	PHROG	phrog_2674	NA	unknown function
UHGV-1981853_36	UniRef90	UniRef90_UPI00038CCB13	glycine rich domain-containing protein	NA
UHGV-1981853_36	eggNOG-mapper	1522092.A0A090EUF1_9CAUD	Glycine rich protein	NA
UHGV-1981853_37	PHROG	phrog_1626	rhodanese-related sulfurtransferase	other
UHGV-1981853_37	eggNOG-mapper	1204535.J9QE35_9CAUD	NA	NA
UHGV-1981853_38	PHROG	phrog_1243	NA	unknown function
UHGV-1981853_38	eggNOG-mapper	1151292.QEW_0438	NA	NA
UHGV-1981853_39	UniRef90	UniRef90_A0A090C6U7	Putative membrane protein	NA
UHGV-1981853_39	eggNOG-mapper	272563.CD630_09700	Haemolysin XhlA	NA