UHGV-1983096

Genome information

Genome length 35,139 bps

CDS count 68

Completeness 56.09% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-1983096
vOTU ID	vOTU-026775
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014934\|Ga0169773_100254\|provirus_9840_44978
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.01
Jumbo phage	No

Genome content
Genome length	35,139 bps
GC content	37.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	86.34%
Average CDS length	448.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1983096_1	eggNOG-mapper	357276.EL88_08210	NA	NA
UHGV-1983096_3	eggNOG-mapper	411479.BACUNI_00713	NA	NA
UHGV-1983096_6	UniRef90	UniRef90_A0A1M6ADT9	Uracil DNA glycosylase superfamily protein	NA
UHGV-1983096_6	eggNOG-mapper	411479.BACUNI_00711	NA	NA
UHGV-1983096_6	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-1983096_7	KOfam	K07488	K07488; transposase	NA
UHGV-1983096_7	PHROG	phrog_25593	NA	unknown function
UHGV-1983096_7	UniRef90	UniRef90_A0A374VBT4	IS1595 family transposase	NA
UHGV-1983096_7	eggNOG-mapper	411479.BACUNI_00709	COG NOG14720 non supervised orthologous group	NA
UHGV-1983096_7	Pfam	PF12760	Transposase zinc-ribbon domain	Zn_Tnp_IS1595
UHGV-1983096_7	Pfam	PF12762	ISXO2-like transposase domain	DDE_Tnp_IS1595
UHGV-1983096_7	NCBIFam	NF033547.1	IS1595 family transposase	NA
UHGV-1983096_7	COG	COG3677	Transposase InsA	NA
UHGV-1983096_7	Structural annotation	PF12762, PF12760, NF033547, TIGR00280, COG3316, COG1997	NA	NA
UHGV-1983096_8	PHROG	phrog_3261	NA	unknown function
UHGV-1983096_8	UniRef90	UniRef90_A0A1Q6IP99	NA	NA
UHGV-1983096_8	eggNOG-mapper	761193.Runsl_5004	NA	NA
UHGV-1983096_8	Pfam	PF09926	NA	DUF2158
UHGV-1983096_8	COG	COG5475	NA	NA
UHGV-1983096_9	Structural annotation	PF07430	NA	NA
UHGV-1983096_10	PHROG	phrog_37753	NA	unknown function
UHGV-1983096_10	UniRef90	UniRef90_A0A078RDA9	Type I restriction enzyme R family protein	NA
UHGV-1983096_10	eggNOG-mapper	1268240.ATFI01000008_gene2547	NA	NA
UHGV-1983096_10	Structural annotation	PF13588, PF01878, COG4748, COG2947	NA	NA
UHGV-1983096_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1983096_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1983096_11	UniRef90	UniRef90_D1K9I3	Peptidase S24-like protein	NA
UHGV-1983096_11	eggNOG-mapper	357276.EL88_11575	Transcriptional regulator	NA
UHGV-1983096_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1983096_11	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1983096_11	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1983096_13	PHROG	phrog_1086	NA	unknown function
UHGV-1983096_13	UniRef90	UniRef90_A0A173Z9U0	NA	NA
UHGV-1983096_13	eggNOG-mapper	357276.EL88_11565	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-1983096_13	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-1983096_13	Structural annotation	PF10902	NA	NA
UHGV-1983096_14	Structural annotation	TIGR03809	NA	NA
UHGV-1983096_15	UniRef90	UniRef90_A0A017N6D3	Putative membrane protein	NA
UHGV-1983096_15	eggNOG-mapper	470145.BACCOP_01611	NA	NA
UHGV-1983096_17	eggNOG-mapper	357276.EL88_11545	NA	NA
UHGV-1983096_18	UniRef90	UniRef90_A0A413RV79	DNA-binding response regulator	NA
UHGV-1983096_18	eggNOG-mapper	357276.EL88_11540	response regulator	NA
UHGV-1983096_18	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1983096_18	Structural annotation	PF00196, COG2771	NA	NA
UHGV-1983096_19	PHROG	phrog_17289	NA	unknown function
UHGV-1983096_19	eggNOG-mapper	1392486.JIAF01000004_gene841	NA	NA
UHGV-1983096_19	Structural annotation	PF11112	NA	NA
UHGV-1983096_20	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1983096_20	UniRef90	UniRef90_A0A380Z5W5	ATP-binding protein	NA
UHGV-1983096_20	eggNOG-mapper	357276.EL88_11530	AAA domain	NA
UHGV-1983096_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-1983096_20	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-1983096_20	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1983096_21	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1983096_21	UniRef90	UniRef90_A0A173Z8S3	NUMOD4 motif	NA
UHGV-1983096_21	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1983096_21	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1983096_21	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1983096_21	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1983096_21	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1983096_22	PHROG	phrog_35319	NA	unknown function
UHGV-1983096_22	UniRef90	UniRef90_A0A6I1B9T0	HNH endonuclease	NA
UHGV-1983096_22	eggNOG-mapper	411477.PARMER_02080	NA	NA
UHGV-1983096_22	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-1983096_23	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1983096_23	UniRef90	UniRef90_A0A413GSH5	NA	NA
UHGV-1983096_23	eggNOG-mapper	357276.EL88_11515	NA	NA
UHGV-1983096_23	Pfam	PF11325	NA	DUF3127
UHGV-1983096_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1983096_23	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-1983096_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1983096_24	UniRef90	UniRef90_A0A7J5G7S3	HNH endonuclease	NA
UHGV-1983096_24	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1983096_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1983096_24	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1983096_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1983096_24	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1983096_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1983096_25	eggNOG-mapper	435591.BDI_0854	NA	NA
UHGV-1983096_25	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1983096_26	PHROG	phrog_12688	NA	unknown function
UHGV-1983096_26	eggNOG-mapper	762982.HMPREF9442_00547	NA	NA
UHGV-1983096_26	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-1983096_27	PHROG	phrog_11501	NA	unknown function
UHGV-1983096_27	UniRef90	UniRef90_F3QQV3	Conserved domain protein	NA
UHGV-1983096_27	eggNOG-mapper	762982.HMPREF9442_00546	NA	NA
UHGV-1983096_27	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1983096_28	eggNOG-mapper	1122971.BAME01000006_gene915	NA	NA
UHGV-1983096_29	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1983096_29	UniRef90	UniRef90_UPI000E4AE634	recombination protein NinG	NA
UHGV-1983096_29	eggNOG-mapper	357276.EL88_11490	Bacteriophage Lambda NinG protein	NA
UHGV-1983096_29	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1983096_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1983096_29	Structural annotation	PF05766	NA	NA
UHGV-1983096_30	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1983096_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1983096_30	UniRef90	UniRef90_D1K9K1	Helicase C-terminal domain protein	NA
UHGV-1983096_30	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-1983096_30	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-1983096_30	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1983096_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1983096_30	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1983096_30	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1983096_31	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1983096_31	UniRef90	UniRef90_UPI0018A9E0B0	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1983096_31	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-1983096_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1983096_31	Structural annotation	PF20024, MF_01819, NF040642, COG0640	NA	NA
UHGV-1983096_32	PHROG	phrog_29547	NA	unknown function
UHGV-1983096_32	eggNOG-mapper	1122985.HMPREF1991_02244	NA	NA
UHGV-1983096_32	Pfam	PF20338	NA	DUF6633
UHGV-1983096_32	Structural annotation	PF20338	NA	NA
UHGV-1983096_33	PHROG	phrog_19578	NA	unknown function
UHGV-1983096_33	eggNOG-mapper	357276.EL88_11465	NA	NA
UHGV-1983096_33	Structural annotation	PF09827, MF_01471	NA	NA
UHGV-1983096_34	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-1983096_34	eggNOG-mapper	357276.EL88_11460	NA	NA
UHGV-1983096_35	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1983096_35	UniRef90	UniRef90_A0A6I0HLL6	Class I SAM-dependent methyltransferase	NA
UHGV-1983096_35	eggNOG-mapper	1121100.JCM6294_542	Methyltransferase domain	NA
UHGV-1983096_35	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1983096_35	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1983096_35	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-1983096_35	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1983096_36	eggNOG-mapper	1235803.C825_05366	NA	NA
UHGV-1983096_36	Structural annotation	PF10781	NA	NA
UHGV-1983096_39	eggNOG-mapper	547042.BACCOPRO_02157	MutS domain I	NA
UHGV-1983096_39	COG	COG0249	DNA mismatch repair ATPase MutS	NA
UHGV-1983096_40	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-1983096_40	Structural annotation	TIGR01453	NA	NA
UHGV-1983096_41	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1983096_41	PHROG	phrog_1	integrase	integration and excision
UHGV-1983096_41	UniRef90	UniRef90_A0A854M0D4	Integrase	NA
UHGV-1983096_41	eggNOG-mapper	585543.HMPREF0969_03618	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1983096_41	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1983096_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1983096_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1983096_41	Structural annotation	PF00589, PF02899, MF_02055, NF040815, COG4973	NA	NA
UHGV-1983096_42	PHROG	phrog_9133	NA	unknown function
UHGV-1983096_42	UniRef90	UniRef90_A0A414Y870	SAM-dependent DNA methyltransferase	NA
UHGV-1983096_42	eggNOG-mapper	1122971.BAME01000191_gene6750	DNA restriction-modification system	NA
UHGV-1983096_42	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1983096_42	Structural annotation	PF02384, MF_00607, TIGR00497, COG0286	NA	NA
UHGV-1983096_43	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1983096_43	UniRef90	UniRef90_A0A6I0IHE8	Radical SAM protein	NA
UHGV-1983096_43	eggNOG-mapper	742727.HMPREF9447_01719	radical SAM domain protein	NA
UHGV-1983096_43	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1983096_43	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-1983096_44	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1983096_44	UniRef90	UniRef90_A0A173Z6Z4	Class I SAM-dependent methyltransferase	NA
UHGV-1983096_44	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-1983096_44	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1983096_44	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-1983096_44	Structural annotation	PF05148, MF_00735, NF033398, COG1041	NA	NA
UHGV-1983096_45	eggNOG-mapper	435590.BVU_0919	NA	NA
UHGV-1983096_46	Structural annotation	PF17613	NA	NA
UHGV-1983096_48	UniRef90	UniRef90_UPI000E4B71D6	NA	NA
UHGV-1983096_48	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-1983096_48	Pfam	PF04448	NA	DUF551
UHGV-1983096_50	PHROG	phrog_28300	NA	unknown function
UHGV-1983096_50	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-1983096_51	Structural annotation	PF17574, TIGR04550	NA	NA
UHGV-1983096_52	PHROG	phrog_12005	NA	unknown function
UHGV-1983096_53	PHROG	phrog_874	NA	unknown function
UHGV-1983096_53	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-1983096_53	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1983096_54	PHROG	phrog_9236	pyrophosphatase	other
UHGV-1983096_54	eggNOG-mapper	657309.BXY_08510	NA	NA
UHGV-1983096_54	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1983096_55	eggNOG-mapper	357276.EL88_11425	NA	NA
UHGV-1983096_56	Structural annotation	PF08928	NA	NA
UHGV-1983096_58	AcrCatalog	cluster_40854	NA	NA
UHGV-1983096_58	Structural annotation	PF19870	NA	NA
UHGV-1983096_59	PHROG	phrog_17519	NA	unknown function
UHGV-1983096_59	UniRef90	UniRef90_A0A414X359	NA	NA
UHGV-1983096_59	eggNOG-mapper	411476.BACOVA_03901	NA	NA
UHGV-1983096_59	Pfam	PF12083	NA	DUF3560
UHGV-1983096_59	Structural annotation	PF12083	NA	NA
UHGV-1983096_61	PHROG	phrog_18237	NA	unknown function
UHGV-1983096_65	Structural annotation	PF10623	NA	NA
UHGV-1983096_66	PHROG	phrog_17519	NA	unknown function
UHGV-1983096_66	UniRef90	UniRef90_A0A174S5G9	NA	NA
UHGV-1983096_66	eggNOG-mapper	484018.BACPLE_02420	NA	NA
UHGV-1983096_66	Pfam	PF12083	NA	DUF3560
UHGV-1983096_66	Structural annotation	PF12083	NA	NA
UHGV-1983096_67	eggNOG-mapper	36875.HQ29_07015	NA	NA
UHGV-1983096_68	eggNOG-mapper	411901.BACCAC_01162	NA	NA