UHGV-1983232

Genome information

Genome length 35,014 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-1983232
vOTU ID	vOTU-008610
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014954\|Ga0169837_100403
BioSample	SAMEA2580249
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.68
Jumbo phage	No

Genome content
Genome length	35,014 bps
GC content	40.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.42%
Average CDS length	574.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1983232_1	KOfam	K07273	acm; lysozyme	NA
UHGV-1983232_1	PHROG	phrog_291	endolysin	lysis
UHGV-1983232_1	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-1983232_1	eggNOG-mapper	397287.C807_01339	Glycosyl hydrolases family 25	NA
UHGV-1983232_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1983232_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1983232_1	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-1983232_4	PHROG	phrog_24103	NA	unknown function
UHGV-1983232_4	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-1983232_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1983232_5	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-1983232_6	PHROG	phrog_15594	NA	unknown function
UHGV-1983232_6	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-1983232_6	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1983232_7	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1983232_7	COG	COG4675	Phage tail collar domain	NA
UHGV-1983232_8	PHROG	phrog_11037	NA	unknown function
UHGV-1983232_8	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-1983232_8	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-1983232_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1983232_8	Structural annotation	PF18013	NA	NA
UHGV-1983232_9	PHROG	phrog_13289	tail protein	tail
UHGV-1983232_9	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-1983232_9	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1983232_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1983232_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1983232_9	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1983232_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1983232_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1983232_10	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-1983232_10	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-1983232_10	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1983232_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-1983232_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1983232_11	PHROG	phrog_23464	NA	unknown function
UHGV-1983232_11	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-1983232_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1983232_13	PHROG	phrog_88	major tail protein	tail
UHGV-1983232_13	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-1983232_13	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-1983232_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1983232_13	COG	COG5492	NA	NA
UHGV-1983232_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1983232_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1983232_14	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1983232_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1983232_14	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1983232_15	Structural annotation	PF05657	NA	NA
UHGV-1983232_16	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-1983232_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1983232_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1983232_18	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-1983232_18	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1983232_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1983232_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1983232_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1983232_18	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1983232_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1983232_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1983232_19	UniRef90	UniRef90_A0A350VIU3	ATP-dependent Clp protease proteolytic subunit (Fragment)	NA
UHGV-1983232_19	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1983232_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1983232_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1983232_19	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1983232_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1983232_20	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-1983232_20	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1983232_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1983232_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1983232_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1983232_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1983232_21	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1983232_21	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1983232_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1983232_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1983232_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1983232_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1983232_22	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1983232_22	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1983232_22	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1983232_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1983232_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1983232_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1983232_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1983232_23	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-1983232_23	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-1983232_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1983232_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1983232_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1983232_24	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-1983232_24	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-1983232_24	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-1983232_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1983232_25	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-1983232_25	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-1983232_25	Structural annotation	PF21578	NA	NA
UHGV-1983232_31	PHROG	phrog_21026	NA	unknown function
UHGV-1983232_31	Structural annotation	PF21744	NA	NA
UHGV-1983232_34	PHROG	phrog_15077	NA	unknown function
UHGV-1983232_34	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-1983232_34	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-1983232_34	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1983232_35	PHROG	phrog_8470	NA	unknown function
UHGV-1983232_35	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-1983232_35	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-1983232_35	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1983232_35	Structural annotation	PF14284, NF008072	NA	NA
UHGV-1983232_36	PHROG	phrog_8470	NA	unknown function
UHGV-1983232_36	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-1983232_37	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-1983232_38	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-1983232_38	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-1983232_41	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-1983232_42	PHROG	phrog_585	NA	unknown function
UHGV-1983232_42	UniRef90	UniRef90_UPI00035CA235	NA	NA
UHGV-1983232_42	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-1983232_42	Pfam	PF10711	NA	DUF2513
UHGV-1983232_42	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-1983232_44	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-1983232_45	PHROG	phrog_9607	NA	unknown function
UHGV-1983232_45	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-1983232_45	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-1983232_50	UniRef90	UniRef90_A0A0M6WGZ2	HTH_7 domain-containing protein	NA
UHGV-1983232_50	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-1983232_50	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-1983232_50	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1983232_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1983232_51	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1983232_51	UniRef90	UniRef90_A0A0M6WGY8	HTH cro/C1-type domain-containing protein	NA
UHGV-1983232_51	eggNOG-mapper	642492.Clole_2801	Helix-turn-helix XRE-family like proteins	NA
UHGV-1983232_51	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1983232_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1983232_51	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-1983232_53	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1983232_53	UniRef90	UniRef90_UPI000E5D2F29	Abi family protein	NA
UHGV-1983232_53	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-1983232_53	PADLOC	AbiD	AbiD	Abi
UHGV-1983232_53	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1983232_53	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1983232_53	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1983232_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1983232_54	PHROG	phrog_95	integrase	integration and excision
UHGV-1983232_54	UniRef90	UniRef90_B0NAW3	DNA-invertase hin	NA
UHGV-1983232_54	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-1983232_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1983232_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-1983232_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1983232_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1983232_54	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1983232_55	UniRef90	UniRef90_R5QKX6	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-1983232_55	eggNOG-mapper	1280698.AUJS01000002_gene2767	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-1983232_55	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-1983232_56	KOfam	K00147	proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]	NA
UHGV-1983232_56	PHROG	phrog_13417	NA	unknown function
UHGV-1983232_56	UniRef90	UniRef90_C4Z9V4	Gamma-glutamyl phosphate reductase	NA
UHGV-1983232_56	eggNOG-mapper	1410625.JHWK01000003_gene1743	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	NA
UHGV-1983232_56	Pfam	PF00171	Aldehyde dehydrogenase family	Aldedh
UHGV-1983232_56	NCBIFam	NF001221.0	glutamate-5-semialdehyde dehydrogenase	NA
UHGV-1983232_56	COG	COG0014	Gamma-glutamyl phosphate reductase	NA