UHGV-1983743

Genome information

Genome length 31,385 bps

CDS count 52

Completeness 86.64% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1983743
vOTU ID	vOTU-018387
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014916\|Ga0169762_100006\|provirus_98208_129592
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.56
Jumbo phage	No

Genome content
Genome length	31,385 bps
GC content	50.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.66%
Average CDS length	555.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1983743_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1983743_1	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1983743_1	UniRef90	UniRef90_A0A2T3FF88	HTH cro/C1-type domain-containing protein	NA
UHGV-1983743_1	eggNOG-mapper	1415774.U728_478	Helix-turn-helix XRE-family like proteins	NA
UHGV-1983743_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1983743_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1983743_1	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1983743_4	PHROG	phrog_14088	NA	unknown function
UHGV-1983743_4	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-1983743_4	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-1983743_5	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1983743_5	UniRef90	UniRef90_UPI000463F528	NA	NA
UHGV-1983743_5	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-1983743_5	Structural annotation	COG2250	NA	NA
UHGV-1983743_7	eggNOG-mapper	756499.Desde_3212	NA	NA
UHGV-1983743_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1983743_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1983743_11	UniRef90	UniRef90_A0A2T3FFB7	ParA family protein	NA
UHGV-1983743_11	eggNOG-mapper	610130.Closa_0717	AAA domain	NA
UHGV-1983743_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-1983743_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1983743_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1983743_12	PHROG	phrog_7566	NA	unknown function
UHGV-1983743_12	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-1983743_12	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-1983743_13	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1983743_13	PHROG	phrog_15982	NA	unknown function
UHGV-1983743_13	UniRef90	UniRef90_A0A2T3FG76	ParB domain-containing protein	NA
UHGV-1983743_13	eggNOG-mapper	641107.CDLVIII_1319	ParB-like nuclease domain	NA
UHGV-1983743_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1983743_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1983743_13	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1983743_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1983743_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1983743_19	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1983743_19	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-1983743_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1983743_19	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-1983743_20	AcrCatalog	cluster_12174	NA	NA
UHGV-1983743_20	Structural annotation	MF_01194, NF010729	NA	NA
UHGV-1983743_22	PHROG	phrog_419	NA	unknown function
UHGV-1983743_22	UniRef90	UniRef90_UPI001C4DCDCC	PGDYG domain-containing protein	NA
UHGV-1983743_22	eggNOG-mapper	797515.HMPREF9103_00825	NA	NA
UHGV-1983743_22	Structural annotation	PF14083	NA	NA
UHGV-1983743_23	UniRef90	UniRef90_A0A3R6V2Q9	CopG family transcriptional regulator	NA
UHGV-1983743_23	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1983743_23	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1983743_26	PHROG	phrog_11237	NA	unknown function
UHGV-1983743_26	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-1983743_27	PHROG	phrog_3291	NA	unknown function
UHGV-1983743_27	eggNOG-mapper	658086.HMPREF0994_06176	NA	NA
UHGV-1983743_28	PHROG	phrog_1758	acetyltransferase	other
UHGV-1983743_28	UniRef90	UniRef90_UPI001D0630E0	N-acetyltransferase	NA
UHGV-1983743_28	eggNOG-mapper	1235798.C817_03484	acetyltransferase	NA
UHGV-1983743_28	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1983743_28	Structural annotation	PF17013, MF_03130, NF000482, COG3981	NA	NA
UHGV-1983743_29	PHROG	phrog_2412	NA	unknown function
UHGV-1983743_29	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-1983743_29	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-1983743_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1983743_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1983743_30	UniRef90	UniRef90_A0A2T3EZG6	PBSX family phage terminase large subunit	NA
UHGV-1983743_30	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-1983743_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1983743_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1983743_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1983743_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1983743_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-1983743_31	UniRef90	UniRef90_UPI001D71E5F8	phage portal protein	NA
UHGV-1983743_31	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-1983743_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1983743_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1983743_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1983743_32	UniRef90	UniRef90_A0A2T3EZI9	Ntox50 domain-containing protein	NA
UHGV-1983743_32	eggNOG-mapper	1295642.H839_08294	Phage minor capsid protein 2	NA
UHGV-1983743_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1983743_32	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1983743_32	COG	COG2369	NA	NA
UHGV-1983743_32	Structural annotation	PF06152	NA	NA
UHGV-1983743_33	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-1983743_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1983743_34	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-1983743_35	PHROG	phrog_212	major head protein	head and packaging
UHGV-1983743_35	UniRef90	UniRef90_A0A2T3EZI1	Phage capsid protein	NA
UHGV-1983743_35	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-1983743_35	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1983743_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1983743_36	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-1983743_36	eggNOG-mapper	1231057.AMGD01000018_gene3617	NA	NA
UHGV-1983743_37	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1983743_37	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-1983743_37	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-1983743_37	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1983743_37	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-1983743_37	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1983743_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1983743_38	UniRef90	UniRef90_UPI001D057CDA	minor capsid protein	NA
UHGV-1983743_38	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-1983743_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1983743_38	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1983743_39	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1983743_39	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-1983743_39	Structural annotation	PF12691	NA	NA
UHGV-1983743_40	PHROG	phrog_820	major tail protein	tail
UHGV-1983743_40	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-1983743_40	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-1983743_40	COG	COG5492	NA	NA
UHGV-1983743_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1983743_41	Structural annotation	PF10666	NA	NA
UHGV-1983743_42	PHROG	phrog_706	NA	unknown function
UHGV-1983743_42	UniRef90	UniRef90_UPI001D038340	bacteriophage Gp15 family protein	NA
UHGV-1983743_42	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-1983743_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1983743_42	Structural annotation	PF06854	NA	NA
UHGV-1983743_44	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1983743_44	UniRef90	UniRef90_A0A2T3EZI8	PhageMin_Tail domain-containing protein	NA
UHGV-1983743_44	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-1983743_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1983743_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1983743_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1983743_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1983743_45	UniRef90	UniRef90_A0A2T3EZG0	MtfA protein	NA
UHGV-1983743_45	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-1983743_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-1983743_45	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1983743_46	PHROG	phrog_3558	tail protein	tail
UHGV-1983743_46	UniRef90	UniRef90_A0A2T3EZH1	Prophage_tail domain-containing protein	NA
UHGV-1983743_46	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-1983743_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1983743_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1983743_46	COG	COG4926	Phage-related protein	NA
UHGV-1983743_46	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-1983743_48	UniRef90	UniRef90_UPI001D0728FD	pyocin knob domain-containing protein	NA
UHGV-1983743_48	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-1983743_49	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-1983743_50	UniRef90	UniRef90_A0A2T3F842	XkdX family protein	NA
UHGV-1983743_50	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1983743_50	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1983743_51	PHROG	phrog_199	holin	lysis
UHGV-1983743_51	UniRef90	UniRef90_A0A2T3F830	Holin	NA
UHGV-1983743_51	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-1983743_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1983743_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1983743_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1983743_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1983743_52	PHROG	phrog_14030	NA	unknown function
UHGV-1983743_52	UniRef90	UniRef90_UPI001F3A7341	SH3 domain-containing protein	NA
UHGV-1983743_52	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA