UHGV-1984672

Genome information

Genome length 30,301 bps

CDS count 44

Completeness 81.27% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-1984672
vOTU ID	vOTU-017856
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023289\|Ga0256630_10262
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.85
Jumbo phage	No

Genome content
Genome length	30,301 bps
GC content	64.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.88%
Average CDS length	641.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1984672_1	PHROG	phrog_7037	tail fiber protein	tail
UHGV-1984672_1	eggNOG-mapper	742738.HMPREF9460_01382	NA	NA
UHGV-1984672_2	PHROG	phrog_521	tail protein	tail
UHGV-1984672_2	UniRef90	UniRef90_UPI00102FFF94	NA	NA
UHGV-1984672_2	eggNOG-mapper	742738.HMPREF9460_04273	NA	NA
UHGV-1984672_2	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1984672_2	COG	COG3778	NA	NA
UHGV-1984672_2	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1984672_3	PHROG	phrog_6	baseplate protein	tail
UHGV-1984672_3	UniRef90	UniRef90_A0A096AXU8	Baseplate_J domain-containing protein	NA
UHGV-1984672_3	eggNOG-mapper	742738.HMPREF9460_04274	Baseplate J-like protein	NA
UHGV-1984672_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1984672_3	COG	COG3299	NA	NA
UHGV-1984672_3	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1984672_4	PHROG	phrog_120	baseplate protein	tail
UHGV-1984672_4	UniRef90	UniRef90_G9YP57	Phage protein XkdS domain protein	NA
UHGV-1984672_4	eggNOG-mapper	742738.HMPREF9460_04275	NA	NA
UHGV-1984672_4	Pfam	PF10934	NA	DUF2634
UHGV-1984672_4	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1984672_4	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1984672_5	PHROG	phrog_28484	NA	unknown function
UHGV-1984672_6	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1984672_6	UniRef90	UniRef90_A0A1Y4FKQ9	Addiction module toxin RelE	NA
UHGV-1984672_6	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-1984672_6	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-1984672_7	PHROG	phrog_33232	NA	unknown function
UHGV-1984672_7	UniRef90	UniRef90_A0A2U1B9L8	HicB-like protein involved in pilus formation	NA
UHGV-1984672_7	eggNOG-mapper	1118054.CAGW01000104_gene4617	HicB family	NA
UHGV-1984672_7	Pfam	PF05534	HicB family	HicB
UHGV-1984672_7	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1984672_7	Structural annotation	PF05534, NF041793, COG4226	NA	NA
UHGV-1984672_8	PHROG	phrog_400	tail protein	tail
UHGV-1984672_8	UniRef90	UniRef90_A0A0S2W5L1	Phage-like element PBSX protein xkdQ	NA
UHGV-1984672_8	eggNOG-mapper	742738.HMPREF9460_00895	NLP P60 protein	NA
UHGV-1984672_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1984672_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1984672_9	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1984672_9	PHROG	phrog_380	endolysin	lysis
UHGV-1984672_9	UniRef90	UniRef90_A0A1Y4FGT2	LysM domain-containing protein	NA
UHGV-1984672_9	eggNOG-mapper	742738.HMPREF9460_04309	Lysin motif	NA
UHGV-1984672_9	Pfam	PF01476	LysM domain	LysM
UHGV-1984672_9	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1984672_9	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-1984672_10	PHROG	phrog_33570	NA	unknown function
UHGV-1984672_10	UniRef90	UniRef90_A0A1Y3ZUQ9	TMP_3 domain-containing protein	NA
UHGV-1984672_10	eggNOG-mapper	742738.HMPREF9460_01378	tape measure	NA
UHGV-1984672_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1984672_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1984672_11	PHROG	phrog_28591	NA	unknown function
UHGV-1984672_12	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1984672_12	UniRef90	UniRef90_G9YLM1	Phage XkdN-like protein	NA
UHGV-1984672_12	eggNOG-mapper	742738.HMPREF9460_01376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1984672_12	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1984672_12	Structural annotation	PF08890	NA	NA
UHGV-1984672_13	PHROG	phrog_365	tail protein	tail
UHGV-1984672_13	UniRef90	UniRef90_A0A174JBB0	Phage portal protein	NA
UHGV-1984672_13	eggNOG-mapper	742738.HMPREF9460_01375	Phage tail tube protein	NA
UHGV-1984672_13	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1984672_13	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1984672_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1984672_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1984672_14	UniRef90	UniRef90_A0A6N3FW74	Bro-N domain-containing protein	NA
UHGV-1984672_14	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-1984672_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1984672_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1984672_15	PHROG	phrog_32818	NA	unknown function
UHGV-1984672_16	Structural annotation	PF08681	NA	NA
UHGV-1984672_17	PHROG	phrog_1480	tail sheath	tail
UHGV-1984672_17	UniRef90	UniRef90_G9YLM7	Phage_sheath_1C domain-containing protein	NA
UHGV-1984672_17	eggNOG-mapper	742738.HMPREF9460_00884	Phage tail sheath protein subtilisin-like domain	NA
UHGV-1984672_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1984672_17	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1984672_18	PHROG	phrog_525	NA	unknown function
UHGV-1984672_18	eggNOG-mapper	742738.HMPREF9460_01372	NA	NA
UHGV-1984672_18	Pfam	PF20765	NA	DUF6838
UHGV-1984672_18	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1984672_19	PHROG	phrog_38627	NA	unknown function
UHGV-1984672_19	eggNOG-mapper	1007096.BAGW01000012_gene2382	NA	NA
UHGV-1984672_19	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1984672_20	PHROG	phrog_29848	NA	unknown function
UHGV-1984672_20	eggNOG-mapper	742738.HMPREF9460_01370	NA	NA
UHGV-1984672_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1984672_21	UniRef90	UniRef90_UPI001F3C95A9	head-tail connector protein	NA
UHGV-1984672_21	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-1984672_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1984672_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1984672_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1984672_22	UniRef90	UniRef90_A0A2U1BC11	HK97 family phage major capsid protein	NA
UHGV-1984672_22	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1984672_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1984672_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1984672_22	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1984672_23	PHROG	phrog_16951	NA	unknown function
UHGV-1984672_23	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-1984672_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1984672_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-1984672_24	UniRef90	UniRef90_U2A8X0	Phage portal protein, HK97 family	NA
UHGV-1984672_24	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-1984672_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1984672_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1984672_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1984672_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1984672_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1984672_26	UniRef90	UniRef90_A0A096DGH7	Phage terminase, large subunit	NA
UHGV-1984672_26	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-1984672_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1984672_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1984672_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1984672_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1984672_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1984672_27	UniRef90	UniRef90_A0A6I2RDK1	Phage terminase small subunit P27 family	NA
UHGV-1984672_27	eggNOG-mapper	742738.HMPREF9460_00871	phage terminase, small subunit	NA
UHGV-1984672_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1984672_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1984672_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1984672_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1984672_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1984672_28	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1984672_28	UniRef90	UniRef90_A0A096CPA5	ParB domain-containing protein	NA
UHGV-1984672_28	eggNOG-mapper	742738.HMPREF9460_00870	DNA methylase	NA
UHGV-1984672_28	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1984672_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1984672_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1984672_28	COG	COG0863	DNA modification methylase	NA
UHGV-1984672_28	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1984672_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1984672_29	UniRef90	UniRef90_A0A096BC59	HNH domain-containing protein	NA
UHGV-1984672_29	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-1984672_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1984672_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1984672_29	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1984672_30	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-1984672_30	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-1984672_30	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-1984672_30	Structural annotation	PF14205, COG4416	NA	NA
UHGV-1984672_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1984672_31	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-1984672_31	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1984672_32	UniRef90	UniRef90_U2BZ19	NA	NA
UHGV-1984672_32	Pfam	PF04448	NA	DUF551
UHGV-1984672_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1984672_34	PHROG	phrog_27290	NA	unknown function
UHGV-1984672_34	UniRef90	UniRef90_U2A8X7	ParB-like protein	NA
UHGV-1984672_34	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-1984672_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1984672_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1984672_34	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1984672_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1984672_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1984672_35	UniRef90	UniRef90_A0A096BC44	AAA_31 domain-containing protein	NA
UHGV-1984672_35	eggNOG-mapper	742738.HMPREF9460_04050	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1984672_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-1984672_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1984672_35	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1984672_36	PHROG	phrog_27610	NA	unknown function
UHGV-1984672_37	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1984672_37	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1984672_37	UniRef90	UniRef90_G9YLP9	SF4 helicase domain-containing protein	NA
UHGV-1984672_37	eggNOG-mapper	742738.HMPREF9460_04048	NA	NA
UHGV-1984672_37	Pfam	PF13481	AAA domain	AAA_25
UHGV-1984672_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-1984672_37	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-1984672_38	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1984672_38	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-1984672_38	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-1984672_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1984672_38	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-1984672_41	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-1984672_41	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1984672_42	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1984672_42	UniRef90	UniRef90_A0A096AZX7	HTH cro/C1-type domain-containing protein	NA
UHGV-1984672_42	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-1984672_42	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1984672_42	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1984672_42	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-1984672_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1984672_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1984672_44	UniRef90	UniRef90_A0A096BCA8	HTH cro/C1-type domain-containing protein	NA
UHGV-1984672_44	eggNOG-mapper	742738.HMPREF9460_04041	sequence-specific DNA binding	NA
UHGV-1984672_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1984672_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1984672_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA