UHGV-1984976

Genome information

Genome length 33,308 bps

CDS count 42

Completeness 94.84% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-1984976
vOTU ID	vOTU-014298
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014794\|Ga0134448_1000223\|provirus_3610_36917
BioSample	SAMN03922528
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.18
Jumbo phage	No

Genome content
Genome length	33,308 bps
GC content	58.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.37%
Average CDS length	752.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1984976_1	UniRef90	UniRef90_R6U1G3	RSAM-modified six-cysteine peptide	NA
UHGV-1984976_1	eggNOG-mapper	1161902.HMPREF0378_1239	Six-cysteine peptide SCIFF	NA
UHGV-1984976_1	Pfam	PF13165	Six-cysteine peptide SCIFF	SCIFF
UHGV-1984976_1	NCBIFam	TIGR03973.1	six-cysteine ranthipeptide SCIFF	NA
UHGV-1984976_2	KOfam	K14059	int; integrase	NA
UHGV-1984976_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1984976_2	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-1984976_2	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-1984976_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1984976_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1984976_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1984976_4	UniRef90	UniRef90_UPI001ADF19D8	helix-turn-helix domain-containing protein	NA
UHGV-1984976_4	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1984976_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1984976_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1984976_5	UniRef90	UniRef90_UPI00195CC469	helix-turn-helix domain-containing protein	NA
UHGV-1984976_5	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1984976_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1984976_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1984976_6	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1984976_6	UniRef90	UniRef90_A0A3D1VA62	Transcriptional regulator	NA
UHGV-1984976_6	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-1984976_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1984976_6	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1984976_6	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-1984976_7	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-1984976_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1984976_7	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1984976_7	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1984976_7	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-1984976_9	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1984976_9	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-1984976_9	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-1984976_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1984976_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1984976_9	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-1984976_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1984976_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1984976_10	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-1984976_10	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-1984976_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1984976_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1984976_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-1984976_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1984976_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1984976_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1984976_11	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-1984976_11	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1984976_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-1984976_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1984976_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1984976_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1984976_12	PHROG	phrog_27290	NA	unknown function
UHGV-1984976_12	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-1984976_12	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-1984976_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1984976_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1984976_14	PHROG	phrog_22389	NA	unknown function
UHGV-1984976_14	Structural annotation	PF01402, COG4710	NA	NA
UHGV-1984976_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1984976_19	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-1984976_19	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1984976_20	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-1984976_20	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-1984976_20	Structural annotation	PF14205, NF041070	NA	NA
UHGV-1984976_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1984976_21	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-1984976_21	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-1984976_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1984976_21	Structural annotation	TIGR02646	NA	NA
UHGV-1984976_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1984976_22	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-1984976_22	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1984976_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1984976_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1984976_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1984976_22	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-1984976_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-1984976_23	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-1984976_23	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-1984976_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1984976_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1984976_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1984976_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1984976_24	KOfam	K06904	NA	NA
UHGV-1984976_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1984976_24	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-1984976_24	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-1984976_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1984976_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1984976_24	COG	COG3740	Phage head maturation protease	NA
UHGV-1984976_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1984976_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-1984976_25	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-1984976_25	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-1984976_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1984976_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1984976_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1984976_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1984976_26	PHROG	phrog_2550	NA	unknown function
UHGV-1984976_26	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-1984976_26	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-1984976_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1984976_27	PHROG	phrog_19734	NA	unknown function
UHGV-1984976_27	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-1984976_27	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-1984976_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1984976_28	eggNOG-mapper	935948.KE386495_gene1329	NA	NA
UHGV-1984976_28	Structural annotation	PF05657	NA	NA
UHGV-1984976_29	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-1984976_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1984976_29	Structural annotation	TIGR01725	NA	NA
UHGV-1984976_30	PHROG	phrog_88	major tail protein	tail
UHGV-1984976_30	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1984976_30	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1984976_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1984976_30	COG	COG5492	NA	NA
UHGV-1984976_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1984976_31	Structural annotation	PF11836	NA	NA
UHGV-1984976_32	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-1984976_32	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-1984976_32	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-1984976_32	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1984976_32	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1984976_33	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1984976_33	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1984976_33	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1984976_34	PHROG	phrog_26795	NA	unknown function
UHGV-1984976_34	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-1984976_34	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-1984976_34	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1984976_35	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-1984976_36	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-1984976_36	PHROG	phrog_819	tail protein	tail
UHGV-1984976_36	eggNOG-mapper	649747.HMPREF0083_00644	NA	NA
UHGV-1984976_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1984976_37	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-1984976_38	PHROG	phrog_863	tail fiber assembly	tail
UHGV-1984976_38	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1984976_39	PHROG	phrog_13126	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1984976_39	UniRef90	UniRef90_A0A1C7FRY3	Glycosyl transferase family 2	NA
UHGV-1984976_39	eggNOG-mapper	742738.HMPREF9460_00302	transferase activity, transferring glycosyl groups	NA
UHGV-1984976_39	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-1984976_39	Pfam	PF07719	Tetratricopeptide repeat	TPR_2
UHGV-1984976_39	Pfam	PF13428	Tetratricopeptide repeat	TPR_14
UHGV-1984976_39	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-1984976_39	Structural annotation	PF18768, PF13641, MF_00994, MF_00316, TIGR04195, COG0457, COG0463	NA	NA
UHGV-1984976_40	KOfam	K07273	acm; lysozyme	NA
UHGV-1984976_40	PHROG	phrog_291	endolysin	lysis
UHGV-1984976_40	UniRef90	UniRef90_A5KPV8	Glycosyl hydrolase family 25	NA
UHGV-1984976_40	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-1984976_40	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1984976_40	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1984976_40	COG	COG1388	LysM repeat	NA
UHGV-1984976_40	Structural annotation	PF09992, PF01183, COG3698, COG3757	NA	NA
UHGV-1984976_41	PHROG	phrog_10091	holin	lysis
UHGV-1984976_41	UniRef90	UniRef90_A0A1C6KZS6	Small integral membrane protein	NA
UHGV-1984976_41	eggNOG-mapper	1225805.J7KGX7_9CAUD	Bacteriophage holin	NA
UHGV-1984976_41	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1984976_41	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1984976_41	Structural annotation	COG5546	NA	NA
UHGV-1984976_42	PHROG	phrog_937	hemolysin	other
UHGV-1984976_42	eggNOG-mapper	478749.BRYFOR_07561	NA	NA