UHGV-1984999

Genome information

Genome length 37,181 bps

CDS count 71

Completeness 99.76% (high-quality)

geNomad score 0.9499

Prediction confidence Confident

Genome information
Genome ID	UHGV-1984999
vOTU ID	vOTU-062446
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014919\|Ga0169798_100385
BioSample	SAMEA2580210
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9499
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.71
Jumbo phage	No

Genome content
Genome length	37,181 bps
GC content	32.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.60%
Average CDS length	472.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1984999_2	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1984999_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1984999_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1984999_6	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-1984999_6	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-1984999_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1984999_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-1984999_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1984999_7	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1984999_7	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-1984999_7	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1984999_7	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1984999_7	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-1984999_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1984999_8	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-1984999_8	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-1984999_8	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-1984999_10	UniRef90	UniRef90_A0A7U9CJ41	Phosphagen kinase N-terminal domain-containing protein	NA
UHGV-1984999_11	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1984999_11	UniRef90	UniRef90_A0A3E3EG87	SAM-dependent methyltransferase	NA
UHGV-1984999_11	eggNOG-mapper	1232446.BAIE02000011_gene1614	methyltransferase	NA
UHGV-1984999_11	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1984999_11	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1984999_11	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1984999_15	PHROG	phrog_5051	NA	unknown function
UHGV-1984999_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1984999_17	PHROG	phrog_1	integrase	integration and excision
UHGV-1984999_17	UniRef90	UniRef90_UPI000E547716	tyrosine-type recombinase/integrase	NA
UHGV-1984999_17	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1984999_17	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1984999_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1984999_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1984999_17	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1984999_21	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1984999_21	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-1984999_21	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-1984999_21	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1984999_21	Structural annotation	PF13392, PF07453	NA	NA
UHGV-1984999_26	PHROG	phrog_2232	NA	unknown function
UHGV-1984999_26	UniRef90	UniRef90_A0A415XFC3	NA	NA
UHGV-1984999_26	eggNOG-mapper	1095737.HMPREF1110_1198	NA	NA
UHGV-1984999_26	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-1984999_26	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-1984999_28	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1984999_28	UniRef90	UniRef90_UPI001D08DCF8	ORF6C domain-containing protein	NA
UHGV-1984999_28	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-1984999_28	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1984999_28	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1984999_28	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1984999_28	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1984999_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1984999_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1984999_34	UniRef90	UniRef90_G9R0X9	HTH cro/C1-type domain-containing protein	NA
UHGV-1984999_34	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-1984999_34	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1984999_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1984999_34	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1984999_36	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1984999_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1984999_36	UniRef90	UniRef90_G9R0X7	HTH cro/C1-type domain-containing protein	NA
UHGV-1984999_36	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-1984999_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1984999_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1984999_37	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1984999_37	UniRef90	UniRef90_UPI0003129FEE	Ltp family lipoprotein	NA
UHGV-1984999_37	eggNOG-mapper	33035.JPJF01000109_gene437	Host cell surface-exposed lipoprotein	NA
UHGV-1984999_37	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1984999_37	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1984999_38	KOfam	K14059	int; integrase	NA
UHGV-1984999_38	PHROG	phrog_1	integrase	integration and excision
UHGV-1984999_38	UniRef90	UniRef90_UPI000E4CB1B1	site-specific integrase	NA
UHGV-1984999_38	eggNOG-mapper	1232446.BAIE02000011_gene1633	Site-specific recombinase, phage integrase family	NA
UHGV-1984999_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1984999_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1984999_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1984999_38	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1984999_40	eggNOG-mapper	349123.Lreu23DRAFT_4261	domain, Protein	NA
UHGV-1984999_40	COG	COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	NA
UHGV-1984999_41	UniRef90	UniRef90_UPI00067F15F5	helix-turn-helix domain-containing protein	NA
UHGV-1984999_41	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1984999_44	KOfam	K14059	int; integrase	NA
UHGV-1984999_44	PHROG	phrog_1	integrase	integration and excision
UHGV-1984999_44	UniRef90	UniRef90_UPI000E4D01BB	site-specific integrase	NA
UHGV-1984999_44	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-1984999_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1984999_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1984999_44	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-1984999_47	PHROG	phrog_21357	endolysin	lysis
UHGV-1984999_47	UniRef90	UniRef90_A0A6N3AE03	Bacterial SH3 domain protein	NA
UHGV-1984999_47	eggNOG-mapper	428126.CLOSPI_02072	lysozyme activity	NA
UHGV-1984999_47	Pfam	PF05257	CHAP domain	CHAP
UHGV-1984999_47	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1984999_47	COG	COG1388	LysM repeat	NA
UHGV-1984999_47	Structural annotation	PF08460, PF10030, TIGR02594, NF041850, COG4322, COG4991	NA	NA
UHGV-1984999_48	PHROG	phrog_4105	NA	unknown function
UHGV-1984999_48	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-1984999_49	PHROG	phrog_1129	holin	lysis
UHGV-1984999_49	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-1984999_49	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1984999_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1984999_49	Structural annotation	PF06946	NA	NA
UHGV-1984999_53	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-1984999_53	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-1984999_54	PHROG	phrog_32322	NA	unknown function
UHGV-1984999_54	UniRef90	UniRef90_G9R126	Ig-like_bact domain-containing protein	NA
UHGV-1984999_54	eggNOG-mapper	1232446.BAIE02000011_gene1581	NA	NA
UHGV-1984999_54	Pfam	PF13754	NA	Big_3_4
UHGV-1984999_54	Structural annotation	PF13754	NA	NA
UHGV-1984999_55	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-1984999_55	PHROG	phrog_11157	NA	unknown function
UHGV-1984999_55	UniRef90	UniRef90_G9R125	Big_13 domain-containing protein	NA
UHGV-1984999_55	eggNOG-mapper	1232446.BAIE02000011_gene1582	NA	NA
UHGV-1984999_55	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1984999_55	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1984999_55	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1984999_56	PHROG	phrog_13141	NA	unknown function
UHGV-1984999_56	eggNOG-mapper	552396.HMPREF0863_00266	NA	NA
UHGV-1984999_56	Structural annotation	PF20747	NA	NA
UHGV-1984999_57	PHROG	phrog_538	minor tail protein	tail
UHGV-1984999_57	UniRef90	UniRef90_UPI001D08549E	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1984999_57	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-1984999_57	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1984999_57	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1984999_58	eggNOG-mapper	1232446.BAIE02000011_gene1585	NA	NA
UHGV-1984999_58	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1984999_59	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1984999_59	UniRef90	UniRef90_G9R121	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1984999_59	eggNOG-mapper	665956.HMPREF1032_00108	Phage tail tape measure protein, TP901 family	NA
UHGV-1984999_59	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1984999_59	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1984999_59	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1984999_59	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1984999_62	PHROG	phrog_88	major tail protein	tail
UHGV-1984999_62	UniRef90	UniRef90_G9R119	Phi13 family phage major tail protein	NA
UHGV-1984999_62	eggNOG-mapper	543734.LCABL_11170	NA	NA
UHGV-1984999_62	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1984999_62	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1984999_63	UniRef90	UniRef90_R7FK52	Phage protein HK97 gp10 family	NA
UHGV-1984999_63	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1984999_64	Structural annotation	PF05657	NA	NA
UHGV-1984999_65	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1984999_66	PHROG	phrog_749	NA	unknown function
UHGV-1984999_67	PHROG	phrog_10	major head protein	head and packaging
UHGV-1984999_67	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-1984999_67	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1984999_67	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1984999_67	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1984999_67	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1984999_67	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1984999_68	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1984999_68	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1984999_68	UniRef90	UniRef90_G9R113	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1984999_68	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1984999_68	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1984999_68	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1984999_68	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1984999_69	UniRef90	UniRef90_G9R112	HK97 family phage portal protein	NA
UHGV-1984999_69	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1984999_69	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1984999_69	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1984999_69	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1984999_70	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1984999_70	UniRef90	UniRef90_A0A1Q6MQJ0	Terminase	NA
UHGV-1984999_70	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1984999_70	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1984999_70	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1984999_70	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1984999_70	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1984999_71	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1984999_71	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1984999_71	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1984999_71	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1984999_71	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA