UHGV-1985801

Genome information

Genome length 25,586 bps

CDS count 30

Completeness 55.78% (medium-quality)

geNomad score 0.9295

Prediction confidence Confident

Genome information
Genome ID	UHGV-1985801
vOTU ID	vOTU-029696
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300014936\|Ga0169833_100277\|provirus_3_25588
BioSample	SAMEA2580245
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9295
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.33
Jumbo phage	No

Genome content
Genome length	25,586 bps
GC content	46.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	91.02%
Average CDS length	782.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1985801_2	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1985801_2	UniRef90	UniRef90_A0A2X2U7G3	Putative transmembrane anchored protein	NA
UHGV-1985801_2	eggNOG-mapper	180332.JTGN01000004_gene2292	NA	NA
UHGV-1985801_2	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1985801_2	Structural annotation	MF_01865, NF038361, COG0621	NA	NA
UHGV-1985801_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1985801_3	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1985801_3	UniRef90	UniRef90_UPI0015D4C49D	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1985801_3	eggNOG-mapper	742740.HMPREF9474_01225	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1985801_3	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1985801_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1985801_3	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1985801_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1985801_3	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1985801_4	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1985801_4	PHROG	phrog_1	integrase	integration and excision
UHGV-1985801_4	UniRef90	UniRef90_A0A3A9EHG5	Integrase	NA
UHGV-1985801_4	eggNOG-mapper	94624.Bpet1041	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1985801_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1985801_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1985801_4	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1985801_5	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1985801_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1985801_5	UniRef90	UniRef90_A0A4S2GRI0	Integrase	NA
UHGV-1985801_5	eggNOG-mapper	94624.Bpet1040	Site-specific recombinase XerD	NA
UHGV-1985801_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1985801_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1985801_5	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-1985801_6	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1985801_6	PHROG	phrog_1	integrase	integration and excision
UHGV-1985801_6	UniRef90	UniRef90_A0A7X6ZV80	Tyrosine-type recombinase/integrase	NA
UHGV-1985801_6	eggNOG-mapper	1121877.JQKF01000088_gene810	Belongs to the 'phage' integrase family	NA
UHGV-1985801_6	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1985801_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1985801_6	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1985801_6	Structural annotation	PF00589, PF13495, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1985801_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1985801_7	PHROG	phrog_8411	NA	unknown function
UHGV-1985801_7	UniRef90	UniRef90_A0A351TR32	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1985801_7	eggNOG-mapper	1235799.C818_00443	C-5 cytosine-specific DNA methylase	NA
UHGV-1985801_7	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-1985801_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1985801_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1985801_8	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1985801_8	UniRef90	UniRef90_UPI001A9AEEC9	phage terminase small subunit P27 family	NA
UHGV-1985801_8	eggNOG-mapper	97139.C824_04748	Phage terminase, small subunit	NA
UHGV-1985801_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1985801_8	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1985801_8	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1985801_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1985801_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1985801_9	UniRef90	UniRef90_G5F7C8	Phage terminase, large subunit	NA
UHGV-1985801_9	eggNOG-mapper	1235800.C819_02938	Phage Terminase	NA
UHGV-1985801_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1985801_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1985801_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1985801_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1985801_10	UniRef90	UniRef90_UPI001EEF6BD9	prominin family protein	NA
UHGV-1985801_10	eggNOG-mapper	658655.HMPREF0988_02725	NA	NA
UHGV-1985801_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-1985801_11	UniRef90	UniRef90_UPI00189FDDE0	phage portal protein	NA
UHGV-1985801_11	eggNOG-mapper	742740.HMPREF9474_01214	Phage portal protein	NA
UHGV-1985801_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1985801_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1985801_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1985801_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1985801_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1985801_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1985801_12	UniRef90	UniRef90_UPI001A9AFA31	Clp protease ClpP	NA
UHGV-1985801_12	eggNOG-mapper	610130.Closa_1757	Serine dehydrogenase proteinase	NA
UHGV-1985801_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1985801_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1985801_12	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1985801_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1985801_13	UniRef90	UniRef90_UPI00189D5069	phage major capsid protein	NA
UHGV-1985801_13	eggNOG-mapper	742740.HMPREF9474_01212	Phage capsid family	NA
UHGV-1985801_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1985801_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1985801_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1985801_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1985801_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1985801_14	UniRef90	UniRef90_UPI0018A01BDA	head-tail connector protein	NA
UHGV-1985801_14	eggNOG-mapper	742740.HMPREF9474_01211	Phage gp6-like head-tail connector protein	NA
UHGV-1985801_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1985801_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1985801_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1985801_15	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1985801_15	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-1985801_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1985801_16	PHROG	phrog_19291	NA	unknown function
UHGV-1985801_16	eggNOG-mapper	742740.HMPREF9474_01197	NA	NA
UHGV-1985801_17	eggNOG-mapper	908340.HMPREF9406_0152	NA	NA
UHGV-1985801_18	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1985801_18	eggNOG-mapper	908340.HMPREF9406_0151	NA	NA
UHGV-1985801_18	Pfam	PF14359	NA	DUF4406
UHGV-1985801_18	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1985801_19	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1985801_19	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1985801_19	UniRef90	UniRef90_A0A0U5HCA1	DNA polymerase I, thermostable	NA
UHGV-1985801_19	eggNOG-mapper	742741.HMPREF9475_02392	COG COG0749 DNA polymerase I - 3-5 exonuclease and polymerase domains	NA
UHGV-1985801_19	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1985801_19	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1985801_19	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1985801_21	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1985801_21	UniRef90	UniRef90_A0A373XR23	NA	NA
UHGV-1985801_21	eggNOG-mapper	515620.EUBELI_01539	NA	NA
UHGV-1985801_21	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1985801_21	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1985801_22	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1985801_22	UniRef90	UniRef90_A0A3A6KCN9	NA	NA
UHGV-1985801_22	eggNOG-mapper	742741.HMPREF9475_02396	NA	NA
UHGV-1985801_22	Pfam	PF10926	NA	DUF2800
UHGV-1985801_22	COG	COG2887	RecB family exonuclease	NA
UHGV-1985801_22	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1985801_23	PHROG	phrog_408	NA	unknown function
UHGV-1985801_23	UniRef90	UniRef90_A0A898FLC0	DNA ligase	NA
UHGV-1985801_23	eggNOG-mapper	1232449.BAHV02000021_gene1068	NOG23194 non supervised orthologous group	NA
UHGV-1985801_24	PHROG	phrog_13787	NA	unknown function
UHGV-1985801_24	UniRef90	UniRef90_A0A374N0X5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1985801_24	eggNOG-mapper	552396.HMPREF0863_01413	NA	NA
UHGV-1985801_24	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1985801_24	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-1985801_25	PHROG	phrog_6948	NA	unknown function
UHGV-1985801_25	UniRef90	UniRef90_UPI000D6BE445	HNH endonuclease	NA
UHGV-1985801_25	eggNOG-mapper	545696.HOLDEFILI_03760	NA	NA
UHGV-1985801_25	Pfam	PF20277	C-terminal domain 11 of the ABC-three component (ABC-3C) systems	CTD11
UHGV-1985801_26	PHROG	phrog_6259	NA	unknown function
UHGV-1985801_26	eggNOG-mapper	545696.HOLDEFILI_03759	NA	NA
UHGV-1985801_26	Pfam	PF20292	ABC-three component (ABC-3C) system Middle Component 7	MC7
UHGV-1985801_26	Structural annotation	PF20292, NF008565, COG1733	NA	NA
UHGV-1985801_27	PHROG	phrog_5467	NA	unknown function
UHGV-1985801_27	UniRef90	UniRef90_B9YD45	NA	NA
UHGV-1985801_27	eggNOG-mapper	545696.HOLDEFILI_03758	NA	NA
UHGV-1985801_27	Pfam	PF10088	NA	DUF2326
UHGV-1985801_27	COG	COG5293	NA	NA
UHGV-1985801_27	Structural annotation	PF13166, MF_00449, TIGR03185, COG5293	NA	NA
UHGV-1985801_28	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1985801_28	UniRef90	UniRef90_D4MHP9	Predicted transcriptional regulator	NA
UHGV-1985801_28	eggNOG-mapper	545696.HOLDEFILI_03757	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1985801_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1985801_28	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1985801_28	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1985801_29	UniRef90	UniRef90_B9YD43	NA	NA
UHGV-1985801_29	eggNOG-mapper	545696.HOLDEFILI_03756	NA	NA
UHGV-1985801_29	PADLOC	BrxA_00015	BrxA	BREX
UHGV-1985801_29	Pfam	PF08849	BrxA	BrxA
UHGV-1985801_30	UniRef90	UniRef90_A0A1W6WGJ2	Cytoplasmic protein	NA
UHGV-1985801_30	eggNOG-mapper	545696.HOLDEFILI_03755	NA	NA
UHGV-1985801_30	PADLOC	BrxB_00008	BrxB	BREX
UHGV-1985801_30	Pfam	PF08747	BREX protein BrxB	BrxB