UHGV-1988074

Genome information

Genome length 48,548 bps

CDS count 70

Completeness 63.09% (medium-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-1988074
vOTU ID	vOTU-041325
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029067\|Ga0169173_10057\|provirus_2_48549
BioSample	SAMEA2579907
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.75
Jumbo phage	No

Genome content
Genome length	48,548 bps
GC content	36.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	89.61%
Average CDS length	623.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1988074_1	PHROG	phrog_24896	NA	unknown function
UHGV-1988074_1	eggNOG-mapper	762968.HMPREF9441_03606	NA	NA
UHGV-1988074_2	PHROG	phrog_6616	tail protein	tail
UHGV-1988074_2	UniRef90	UniRef90_UPI00085BC306	tail fiber domain-containing protein	NA
UHGV-1988074_2	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-1988074_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1988074_2	COG	COG4926	Phage-related protein	NA
UHGV-1988074_3	PHROG	phrog_1194	NA	unknown function
UHGV-1988074_3	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-1988074_3	Pfam	PF20458	NA	DUF6711
UHGV-1988074_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1988074_4	PHROG	phrog_2546	NA	unknown function
UHGV-1988074_4	UniRef90	UniRef90_UPI0011AF1FA8	zinc ribbon domain-containing protein	NA
UHGV-1988074_4	eggNOG-mapper	1391647.AVSV01000021_gene2233	NA	NA
UHGV-1988074_4	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-1988074_4	Structural annotation	PF13240	NA	NA
UHGV-1988074_5	PHROG	phrog_28918	NA	unknown function
UHGV-1988074_5	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-1988074_5	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1988074_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1988074_6	PHROG	phrog_36112	NA	unknown function
UHGV-1988074_6	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-1988074_7	PHROG	phrog_158	major tail protein	tail
UHGV-1988074_7	UniRef90	UniRef90_A0A7G5N1B9	Phage tail protein	NA
UHGV-1988074_7	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-1988074_7	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1988074_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1988074_8	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1988074_9	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1988074_10	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1988074_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1988074_12	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1988074_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-1988074_14	UniRef90	UniRef90_UPI00085C6894	major capsid protein	NA
UHGV-1988074_14	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-1988074_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1988074_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1988074_15	PHROG	phrog_909	major head protein	head and packaging
UHGV-1988074_15	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-1988074_15	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-1988074_16	UniRef90	UniRef90_UPI00189AAC90	NA	NA
UHGV-1988074_16	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-1988074_16	Structural annotation	PF14265	NA	NA
UHGV-1988074_17	Structural annotation	COG4416	NA	NA
UHGV-1988074_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-1988074_18	UniRef90	UniRef90_UPI00085BD23D	phage portal protein	NA
UHGV-1988074_18	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1988074_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1988074_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1988074_19	UniRef90	UniRef90_UPI000CF88F65	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1988074_19	eggNOG-mapper	1232453.BAIF02000058_gene1624	NA	NA
UHGV-1988074_19	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1988074_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1988074_20	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-1988074_20	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1988074_20	COG	COG5410	NA	NA
UHGV-1988074_20	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1988074_23	PHROG	phrog_3886	NA	unknown function
UHGV-1988074_23	eggNOG-mapper	742735.HMPREF9467_00880	NA	NA
UHGV-1988074_24	KOfam	K03744	lemA; LemA protein	NA
UHGV-1988074_24	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-1988074_24	UniRef90	UniRef90_A0A858MXK1	LemA family protein	NA
UHGV-1988074_24	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-1988074_24	Pfam	PF04011	LemA family	LemA
UHGV-1988074_24	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-1988074_24	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-1988074_25	PHROG	phrog_36365	NA	unknown function
UHGV-1988074_25	eggNOG-mapper	476272.RUMHYD_01925	NA	NA
UHGV-1988074_26	PHROG	phrog_1810	NA	unknown function
UHGV-1988074_26	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-1988074_27	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1988074_27	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-1988074_27	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-1988074_27	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1988074_27	Structural annotation	PF16677	NA	NA
UHGV-1988074_29	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1988074_29	UniRef90	UniRef90_UPI00085C848E	Rha family transcriptional regulator	NA
UHGV-1988074_29	eggNOG-mapper	1347392.CCEZ01000060_gene3299	Phage regulatory protein	NA
UHGV-1988074_29	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1988074_29	COG	COG3617	Prophage antirepressor	NA
UHGV-1988074_30	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1988074_30	UniRef90	UniRef90_UPI00085C7543	helix-turn-helix transcriptional regulator	NA
UHGV-1988074_30	eggNOG-mapper	397290.C810_01714	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1988074_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1988074_32	eggNOG-mapper	1035839.AFNK01000079_gene119	NA	NA
UHGV-1988074_33	PHROG	phrog_5063	NA	unknown function
UHGV-1988074_33	UniRef90	UniRef90_UPI00067F30F1	YddF family protein	NA
UHGV-1988074_33	eggNOG-mapper	102129.Lepto7375DRAFT_7256	NA	NA
UHGV-1988074_33	PADLOC	icity0062	Csx16	CRISPR-CAS
UHGV-1988074_33	Pfam	PF08960	STIV B116-like	STIV_B116-like
UHGV-1988074_33	Structural annotation	PF08960	NA	NA
UHGV-1988074_36	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1988074_36	UniRef90	UniRef90_UPI0011776FE3	AP2 domain-containing protein	NA
UHGV-1988074_36	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-1988074_36	Pfam	PF00847	AP2 domain	AP2
UHGV-1988074_36	Structural annotation	PF18337, PF00847	NA	NA
UHGV-1988074_37	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1988074_37	PHROG	phrog_1	integrase	integration and excision
UHGV-1988074_37	UniRef90	UniRef90_UPI00085CC1F2	tyrosine-type recombinase/integrase	NA
UHGV-1988074_37	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-1988074_37	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1988074_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1988074_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1988074_37	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1988074_38	UniRef90	UniRef90_A0A174JHB2	Ribbon-helix-helix protein, copG family	NA
UHGV-1988074_38	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1988074_38	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1988074_39	eggNOG-mapper	742733.HMPREF9469_00916	sulfate reduction	NA
UHGV-1988074_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1988074_39	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-1988074_41	PHROG	phrog_15198	NA	unknown function
UHGV-1988074_41	UniRef90	UniRef90_A0A2Y9BGD3	NA	NA
UHGV-1988074_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1988074_43	PHROG	phrog_3502	NA	unknown function
UHGV-1988074_43	UniRef90	UniRef90_A0A0J1G875	LexA_DNA_bind domain-containing protein	NA
UHGV-1988074_43	eggNOG-mapper	877414.ATWA01000032_gene1295	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1988074_43	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-1988074_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1988074_44	PHROG	phrog_26824	NA	unknown function
UHGV-1988074_44	UniRef90	UniRef90_UPI001AE7C6D7	DNA primase	NA
UHGV-1988074_44	eggNOG-mapper	203119.Cthe_1888	DNA primase activity	NA
UHGV-1988074_44	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1988074_46	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1988074_46	PHROG	phrog_11992	NA	unknown function
UHGV-1988074_46	UniRef90	UniRef90_UPI00085BBC41	CHC2 zinc finger domain-containing protein	NA
UHGV-1988074_46	eggNOG-mapper	340099.Teth39_0088	PFAM zinc finger CHC2-family protein	NA
UHGV-1988074_46	PADLOC	drt-UG29	DRT	DRT
UHGV-1988074_46	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1988074_46	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1988074_46	Structural annotation	PF01807	NA	NA
UHGV-1988074_47	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1988074_47	UniRef90	UniRef90_R6V942	ERCC4 domain-containing protein	NA
UHGV-1988074_47	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-1988074_47	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-1988074_48	eggNOG-mapper	1298920.KI911353_gene2716	NA	NA
UHGV-1988074_48	Structural annotation	PF19962, COG1579	NA	NA
UHGV-1988074_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1988074_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1988074_49	UniRef90	UniRef90_UPI00085CCD53	single-stranded DNA-binding protein	NA
UHGV-1988074_49	eggNOG-mapper	180332.JTGN01000013_gene949	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1988074_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1988074_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1988074_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1988074_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1988074_49	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1988074_51	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1988074_51	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1988074_51	UniRef90	UniRef90_UPI00085C49F4	MBL fold metallo-hydrolase	NA
UHGV-1988074_51	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-1988074_51	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1988074_51	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1988074_51	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1988074_52	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1988074_52	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1988074_52	UniRef90	UniRef90_UPI0009F44916	recombinase RecT	NA
UHGV-1988074_52	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-1988074_52	Pfam	PF03837	RecT family	RecT
UHGV-1988074_52	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1988074_52	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1988074_52	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1988074_54	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-1988074_54	Structural annotation	PF19157	NA	NA
UHGV-1988074_55	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1988074_55	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1988074_55	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-1988074_55	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-1988074_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1988074_55	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1988074_57	PHROG	phrog_4292	NA	unknown function
UHGV-1988074_57	eggNOG-mapper	478749.BRYFOR_08549	NA	NA
UHGV-1988074_59	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1988074_59	UniRef90	UniRef90_A0A1Y4QVJ7	MazG domain-containing protein	NA
UHGV-1988074_59	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-1988074_60	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1988074_60	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1988074_60	COG	COG4148	ABC-type molybdate transport system, ATPase component ModC	NA
UHGV-1988074_60	Structural annotation	PF21531, TIGR01764, COG3311	NA	NA
UHGV-1988074_61	PHROG	phrog_9607	NA	unknown function
UHGV-1988074_61	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-1988074_61	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-1988074_64	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1988074_64	UniRef90	UniRef90_UPI00189D3C51	ORF6C domain-containing protein	NA
UHGV-1988074_64	eggNOG-mapper	1499683.CCFF01000014_gene3566	Phage regulatory protein	NA
UHGV-1988074_64	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1988074_64	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1988074_64	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1988074_64	Structural annotation	PF10552, PF10543, TIGR02681, COG3943	NA	NA
UHGV-1988074_66	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1988074_66	UniRef90	UniRef90_A0A6L5Y0A7	Helix-turn-helix transcriptional regulator	NA
UHGV-1988074_66	eggNOG-mapper	471875.RUMLAC_01755	sequence-specific DNA binding	NA
UHGV-1988074_66	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1988074_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1988074_66	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1988074_68	KOfam	K02477	K02477; two-component system, LytTR family, response regulator	NA
UHGV-1988074_68	PHROG	phrog_8810	NA	unknown function
UHGV-1988074_68	UniRef90	UniRef90_UPI00085C7DA6	LytTR family DNA-binding domain-containing protein	NA
UHGV-1988074_68	eggNOG-mapper	1235802.C823_04046	LytTr DNA-binding domain	NA
UHGV-1988074_68	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-1988074_68	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-1988074_68	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-1988074_68	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-1988074_69	PHROG	phrog_32721	NA	unknown function
UHGV-1988074_69	UniRef90	UniRef90_UPI00085C0DB7	Ig-like domain-containing protein	NA
UHGV-1988074_69	eggNOG-mapper	180332.JTGN01000012_gene358	Bacterial Ig-like domain 2	NA
UHGV-1988074_69	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1988074_69	COG	COG5492	NA	NA
UHGV-1988074_69	Structural annotation	PF02368, PF08758, PF06832, MF_04116, NF010681, COG5492	NA	NA
UHGV-1988074_70	KOfam	K14059	int; integrase	NA
UHGV-1988074_70	PHROG	phrog_1	integrase	integration and excision
UHGV-1988074_70	UniRef90	UniRef90_D9R5C3	Integrase family protein	NA
UHGV-1988074_70	eggNOG-mapper	742740.HMPREF9474_04330	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1988074_70	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1988074_70	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1988074_70	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1988074_70	Structural annotation	PF00589, MF_01808, TIGR02225, NF041908, COG4974, COG3422	NA	NA