UHGV-1988802

Genome information

Genome length 30,632 bps

CDS count 37

Completeness 51.52% (medium-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-1988802
vOTU ID	vOTU-029401
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029058\|Ga0169611_100048\|provirus_2_30633
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.6
Jumbo phage	No

Genome content
Genome length	30,632 bps
GC content	52.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	94.23%
Average CDS length	783.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1988802_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1988802_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1988802_2	UniRef90	UniRef90_R6CIF3	Phage-related protein	NA
UHGV-1988802_2	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1988802_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1988802_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-1988802_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1988802_3	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1988802_3	UniRef90	UniRef90_UPI001F2AF393	phage tail protein	NA
UHGV-1988802_3	eggNOG-mapper	1120978.KB894083_gene897	Phage-related minor tail protein	NA
UHGV-1988802_3	COG	COG5283	Phage-related tail protein	NA
UHGV-1988802_3	Structural annotation	MF_04138, COG5280	NA	NA
UHGV-1988802_4	PHROG	phrog_2115	tail protein	tail
UHGV-1988802_4	eggNOG-mapper	1216932.CM240_0624	NA	NA
UHGV-1988802_4	Structural annotation	PF11836	NA	NA
UHGV-1988802_5	PHROG	phrog_88	major tail protein	tail
UHGV-1988802_5	UniRef90	UniRef90_R7EV20	Phi13 family phage major tail protein	NA
UHGV-1988802_5	eggNOG-mapper	1216932.CM240_0623	phage major tail protein, phi13 family	NA
UHGV-1988802_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1988802_5	COG	COG5492	NA	NA
UHGV-1988802_5	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1988802_6	PHROG	phrog_78	tail terminator	connector
UHGV-1988802_6	eggNOG-mapper	1347392.CCEZ01000015_gene2833	High confidence in function and specificity	NA
UHGV-1988802_6	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1988802_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1988802_7	UniRef90	UniRef90_A0A412AY96	HK97 gp10 family phage protein	NA
UHGV-1988802_7	eggNOG-mapper	1120978.KB894083_gene902	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1988802_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1988802_7	Structural annotation	TIGR01725	NA	NA
UHGV-1988802_8	UniRef90	UniRef90_R6C714	Phage head-tail adaptor putative	NA
UHGV-1988802_8	eggNOG-mapper	1120978.KB894083_gene903	Phage head-tail joining protein	NA
UHGV-1988802_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1988802_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1988802_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1988802_9	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1988802_9	UniRef90	UniRef90_A0A3D2HUK1	Phage gp6-like head-tail connector protein	NA
UHGV-1988802_9	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-1988802_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1988802_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1988802_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1988802_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-1988802_10	UniRef90	UniRef90_R6C4C2	Phage major capsid protein HK97 family	NA
UHGV-1988802_10	eggNOG-mapper	573061.Clocel_3975	Phage major capsid protein, HK97 family	NA
UHGV-1988802_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1988802_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1988802_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1988802_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1988802_11	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1988802_11	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1988802_11	UniRef90	UniRef90_R6CEE1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1988802_11	eggNOG-mapper	1216932.CM240_0619	Belongs to the peptidase S14 family	NA
UHGV-1988802_11	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1988802_11	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1988802_11	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1988802_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-1988802_12	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-1988802_12	eggNOG-mapper	1216932.CM240_0618	Phage portal protein, HK97 family	NA
UHGV-1988802_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1988802_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1988802_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1988802_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1988802_13	PHROG	phrog_18591	NA	unknown function
UHGV-1988802_13	eggNOG-mapper	171693.BN988_02825	NA	NA
UHGV-1988802_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1988802_14	UniRef90	UniRef90_R6CIH0	Putative phage terminase large subunit	NA
UHGV-1988802_14	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-1988802_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1988802_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1988802_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1988802_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1988802_16	PHROG	phrog_4709	NA	unknown function
UHGV-1988802_16	eggNOG-mapper	693746.OBV_41590	NA	NA
UHGV-1988802_16	AcrCatalog	cluster_3300	NA	NA
UHGV-1988802_17	PHROG	phrog_8677	NA	unknown function
UHGV-1988802_17	UniRef90	UniRef90_A0A316RAU6	NA	NA
UHGV-1988802_17	eggNOG-mapper	665950.HMPREF1025_02707	NA	NA
UHGV-1988802_17	Pfam	PF16468	NA	DUF5049
UHGV-1988802_17	Structural annotation	PF16468	NA	NA
UHGV-1988802_18	PHROG	phrog_3782	NA	unknown function
UHGV-1988802_18	UniRef90	UniRef90_R6C4D3	NA	NA
UHGV-1988802_18	eggNOG-mapper	1111454.HMPREF1250_1744	NA	NA
UHGV-1988802_18	Pfam	PF14192	NA	DUF4314
UHGV-1988802_18	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-1988802_18	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-1988802_19	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-1988802_19	UniRef90	UniRef90_R6CEE8	Virulence-related protein	NA
UHGV-1988802_19	eggNOG-mapper	243164.DET0065	NA	NA
UHGV-1988802_19	AcrCatalog	cluster_16277	NA	NA
UHGV-1988802_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1988802_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1988802_20	UniRef90	UniRef90_R6C729	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1988802_20	eggNOG-mapper	397288.C806_01493	C-5 cytosine-specific DNA methylase	NA
UHGV-1988802_20	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1988802_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1988802_20	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1988802_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1988802_20	Structural annotation	TIGR00675	NA	NA
UHGV-1988802_21	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1988802_21	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1988802_21	UniRef90	UniRef90_R7ELG5	Methyltransferase	NA
UHGV-1988802_21	eggNOG-mapper	665950.HMPREF1025_02642	DNA methylase	NA
UHGV-1988802_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1988802_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1988802_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1988802_21	COG	COG0863	DNA modification methylase	NA
UHGV-1988802_21	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1988802_22	PHROG	phrog_1569	NA	unknown function
UHGV-1988802_22	UniRef90	UniRef90_R7EM33	S-AdoMet_synt_N domain-containing protein	NA
UHGV-1988802_22	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-1988802_22	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-1988802_22	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-1988802_22	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-1988802_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1988802_23	UniRef90	UniRef90_A0A7X5J169	Terminase	NA
UHGV-1988802_23	eggNOG-mapper	665950.HMPREF1025_02640	NA	NA
UHGV-1988802_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1988802_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1988802_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1988802_24	UniRef90	UniRef90_R7ELH0	HNH endonuclease domain protein	NA
UHGV-1988802_24	eggNOG-mapper	1120978.KB894083_gene917	HNH nucleases	NA
UHGV-1988802_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1988802_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1988802_24	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1988802_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1988802_25	UniRef90	UniRef90_UPI0011C72E63	NA	NA
UHGV-1988802_25	eggNOG-mapper	665950.HMPREF1025_02639	NA	NA
UHGV-1988802_25	Pfam	PF07374	NA	DUF1492
UHGV-1988802_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1988802_25	Structural annotation	PF07374, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-1988802_26	PHROG	phrog_7024	NA	unknown function
UHGV-1988802_26	eggNOG-mapper	1111454.HMPREF1250_1737	NA	NA
UHGV-1988802_26	AcrCatalog	cluster_1398	NA	NA
UHGV-1988802_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1988802_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1988802_27	UniRef90	UniRef90_UPI0018AC4012	DEAD/DEAH box helicase	NA
UHGV-1988802_27	eggNOG-mapper	1211035.CD30_08125	SNF2 family N-terminal domain	NA
UHGV-1988802_27	PADLOC	DpdE_00011	DpdE	DPD
UHGV-1988802_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1988802_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1988802_27	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1988802_28	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1988802_28	UniRef90	UniRef90_A0A2V2D903	Nuclease	NA
UHGV-1988802_28	eggNOG-mapper	1121289.JHVL01000019_gene681	VRR-NUC domain-containing protein	NA
UHGV-1988802_28	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1988802_29	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1988802_29	UniRef90	UniRef90_UPI00047C1972	virulence-associated E family protein	NA
UHGV-1988802_29	eggNOG-mapper	1235798.C817_05405	Virulence-associated protein E	NA
UHGV-1988802_29	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1988802_29	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1988802_29	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1988802_30	PHROG	phrog_21138	NA	unknown function
UHGV-1988802_30	eggNOG-mapper	1280681.AUJZ01000037_gene2534	NA	NA
UHGV-1988802_30	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-1988802_31	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1988802_31	UniRef90	UniRef90_UPI0008744738	NA	NA
UHGV-1988802_31	eggNOG-mapper	755731.Clo1100_3606	NA	NA
UHGV-1988802_31	Pfam	PF14359	NA	DUF4406
UHGV-1988802_31	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1988802_32	PHROG	phrog_11138	NA	unknown function
UHGV-1988802_32	UniRef90	UniRef90_UPI0011C778DA	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1988802_32	eggNOG-mapper	706434.HMPREF9429_01140	DNA-templated transcription, initiation	NA
UHGV-1988802_32	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1988802_32	Structural annotation	PF08281, MF_00674, NF010500, COG2739	NA	NA
UHGV-1988802_33	eggNOG-mapper	1347392.CCEZ01000015_gene2866	NA	NA
UHGV-1988802_34	PHROG	phrog_4031	NA	unknown function
UHGV-1988802_34	UniRef90	UniRef90_A0A316RG27	Peptidase_M78 domain-containing protein	NA
UHGV-1988802_34	eggNOG-mapper	592028.GCWU000321_01619	Zn peptidase	NA
UHGV-1988802_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1988802_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1988802_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1988802_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1988802_35	UniRef90	UniRef90_A0A316RAM5	Transcriptional regulator	NA
UHGV-1988802_35	eggNOG-mapper	592028.GCWU000321_01620	NA	NA
UHGV-1988802_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1988802_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1988802_35	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-1988802_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1988802_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1988802_36	UniRef90	UniRef90_A0A316RDF7	Cytosine-specific methyltransferase	NA
UHGV-1988802_36	eggNOG-mapper	1256908.HMPREF0373_01960	NA	NA
UHGV-1988802_36	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1988802_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1988802_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1988802_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1988802_36	Structural annotation	PF00145, MF_01857, TIGR00675, COG0270	NA	NA
UHGV-1988802_37	UniRef90	UniRef90_A0A316RE78	NA	NA
UHGV-1988802_37	eggNOG-mapper	1122991.BAIZ01000080_gene2878	NA	NA
UHGV-1988802_37	Pfam	PF13020	Protein NO VEIN, C-terminal	NOV_C