UHGV-1989568

Genome information

Genome length 39,337 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9304

Prediction confidence Confident

Genome information
Genome ID	UHGV-1989568
vOTU ID	vOTU-011296
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029060\|Ga0169602_1000011\|provirus_277116_339022
BioSample	SAMEA2580021
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9304
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.37
Jumbo phage	No

Genome content
Genome length	39,337 bps
GC content	44.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.00%
Average CDS length	631.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1989568_1	KOfam	K07273	acm; lysozyme	NA
UHGV-1989568_1	PHROG	phrog_291	endolysin	lysis
UHGV-1989568_1	UniRef90	UniRef90_A0A349YST6	Peptidase_M15_3 domain-containing protein	NA
UHGV-1989568_1	eggNOG-mapper	411473.RUMCAL_01945	hydrolase, family 25	NA
UHGV-1989568_1	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1989568_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1989568_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1989568_1	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-1989568_2	PHROG	phrog_443	holin	lysis
UHGV-1989568_2	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-1989568_2	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-1989568_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1989568_2	Structural annotation	PF16945	NA	NA
UHGV-1989568_3	Structural annotation	PF11195	NA	NA
UHGV-1989568_4	PHROG	phrog_35590	NA	unknown function
UHGV-1989568_4	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-1989568_4	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-1989568_4	Structural annotation	PF07675, NF038128	NA	NA
UHGV-1989568_5	PHROG	phrog_25888	NA	unknown function
UHGV-1989568_5	eggNOG-mapper	411473.RUMCAL_01941	cell adhesion	NA
UHGV-1989568_5	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1989568_5	Structural annotation	PF10651, COG3470	NA	NA
UHGV-1989568_6	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-1989568_7	Structural annotation	PF05939, TIGR01633, COG4718	NA	NA
UHGV-1989568_8	PHROG	phrog_5218	NA	unknown function
UHGV-1989568_8	UniRef90	UniRef90_A0A3D5KWG5	PhageMin_Tail domain-containing protein	NA
UHGV-1989568_8	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-1989568_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1989568_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1989568_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1989568_9	PHROG	phrog_706	NA	unknown function
UHGV-1989568_9	UniRef90	UniRef90_A0A174JJ83	Bacteriophage Gp15 protein	NA
UHGV-1989568_9	eggNOG-mapper	742765.HMPREF9457_02134	COG NOG24969 non supervised orthologous group	NA
UHGV-1989568_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1989568_9	Structural annotation	PF06854	NA	NA
UHGV-1989568_10	PHROG	phrog_4450	NA	unknown function
UHGV-1989568_10	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-1989568_10	Pfam	PF20378	NA	DUF6673
UHGV-1989568_10	Structural annotation	PF20378	NA	NA
UHGV-1989568_11	PHROG	phrog_3099	NA	unknown function
UHGV-1989568_11	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-1989568_12	PHROG	phrog_3266	tail completion	connector
UHGV-1989568_12	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-1989568_12	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-1989568_12	Structural annotation	PF12691	NA	NA
UHGV-1989568_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1989568_13	UniRef90	UniRef90_A0A3C0IHV2	Capsid protein	NA
UHGV-1989568_13	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-1989568_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1989568_13	Structural annotation	PF11114	NA	NA
UHGV-1989568_14	PHROG	phrog_3366	NA	unknown function
UHGV-1989568_14	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-1989568_14	Pfam	PF20536	NA	DUF6751
UHGV-1989568_14	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1989568_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1989568_15	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-1989568_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-1989568_16	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-1989568_16	eggNOG-mapper	411473.RUMCAL_01930	NA	NA
UHGV-1989568_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1989568_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1989568_17	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-1989568_17	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-1989568_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1989568_17	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1989568_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1989568_19	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-1989568_19	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-1989568_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1989568_21	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-1989568_21	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-1989568_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1989568_21	COG	COG2369	NA	NA
UHGV-1989568_21	Structural annotation	PF06152	NA	NA
UHGV-1989568_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-1989568_22	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-1989568_22	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-1989568_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1989568_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1989568_23	PHROG	phrog_10250	NA	unknown function
UHGV-1989568_23	UniRef90	UniRef90_U2LZ34	Phage terminase, large subunit, PBSX family	NA
UHGV-1989568_23	eggNOG-mapper	411473.RUMCAL_01923	Phage terminase, large subunit, PBSX family	NA
UHGV-1989568_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1989568_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1989568_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1989568_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1989568_24	eggNOG-mapper	411473.RUMCAL_01921	NA	NA
UHGV-1989568_25	KOfam	K05785	rfaH; transcriptional antiterminator RfaH	NA
UHGV-1989568_25	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-1989568_25	UniRef90	UniRef90_U2K8B7	Transcription termination/antitermination factor NusG	NA
UHGV-1989568_25	eggNOG-mapper	411473.RUMCAL_01920	Transcription termination factor nusG	NA
UHGV-1989568_25	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-1989568_25	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-1989568_25	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-1989568_26	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-1989568_26	UniRef90	UniRef90_UPI001D05DC57	NA	NA
UHGV-1989568_26	eggNOG-mapper	411473.RUMCAL_01919	NA	NA
UHGV-1989568_26	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-1989568_26	Structural annotation	PF11985	NA	NA
UHGV-1989568_27	PHROG	phrog_25462	NA	unknown function
UHGV-1989568_27	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-1989568_27	eggNOG-mapper	411473.RUMCAL_01918	NA	NA
UHGV-1989568_27	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-1989568_28	PHROG	phrog_462	lipoprotein	other
UHGV-1989568_28	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-1989568_29	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-1989568_29	UniRef90	UniRef90_U2KR36	Mor transcription activator family protein	NA
UHGV-1989568_29	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-1989568_29	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-1989568_29	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-1989568_29	Structural annotation	PF08765, COG5566	NA	NA
UHGV-1989568_30	PHROG	phrog_286	NA	unknown function
UHGV-1989568_30	UniRef90	UniRef90_UPI001C3E961D	NA	NA
UHGV-1989568_30	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-1989568_30	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-1989568_30	Structural annotation	PF06252	NA	NA
UHGV-1989568_31	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1989568_31	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1989568_31	UniRef90	UniRef90_U2KRN6	IstB_IS21 domain-containing protein	NA
UHGV-1989568_31	eggNOG-mapper	411473.RUMCAL_01914	NA	NA
UHGV-1989568_31	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1989568_31	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1989568_31	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1989568_32	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1989568_32	eggNOG-mapper	411473.RUMCAL_01913	HNH endonuclease	NA
UHGV-1989568_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1989568_33	PHROG	phrog_5671	NA	unknown function
UHGV-1989568_33	eggNOG-mapper	411473.RUMCAL_01912	NA	NA
UHGV-1989568_34	PHROG	phrog_6244	NA	unknown function
UHGV-1989568_34	eggNOG-mapper	1232453.BAIF02000002_gene1275	YqaJ viral recombinase family	NA
UHGV-1989568_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1989568_35	PHROG	phrog_4292	NA	unknown function
UHGV-1989568_35	eggNOG-mapper	411473.RUMCAL_01910	NA	NA
UHGV-1989568_36	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-1989568_36	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-1989568_36	UniRef90	UniRef90_R7FFF2	AAA domain protein	NA
UHGV-1989568_36	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-1989568_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1989568_36	Pfam	PF13401	AAA domain	AAA_22
UHGV-1989568_36	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-1989568_36	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-1989568_37	PHROG	phrog_310	transposase	integration and excision
UHGV-1989568_37	UniRef90	UniRef90_U2LZ18	Integrase catalytic domain-containing protein	NA
UHGV-1989568_37	eggNOG-mapper	411473.RUMCAL_01908	Mu transposase, C-terminal	NA
UHGV-1989568_37	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-1989568_37	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-1989568_37	Pfam	PF02914	Bacteriophage Mu transposase	DDE_2
UHGV-1989568_37	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-1989568_37	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1989568_37	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-1989568_40	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1989568_40	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1989568_40	UniRef90	UniRef90_UPI00096B318E	helix-turn-helix transcriptional regulator	NA
UHGV-1989568_40	eggNOG-mapper	1051646.VITU9109_07779	PFAM helix-turn-helix domain protein	NA
UHGV-1989568_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1989568_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1989568_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1989568_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1989568_43	UniRef90	UniRef90_B0P6Y9	BRO family, N-terminal domain protein	NA
UHGV-1989568_43	eggNOG-mapper	445972.ANACOL_00517	BRO family, N-terminal domain	NA
UHGV-1989568_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1989568_43	COG	COG3617	Prophage antirepressor	NA
UHGV-1989568_43	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-1989568_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1989568_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1989568_44	UniRef90	UniRef90_R7FFE5	HTH cro/C1-type domain-containing protein	NA
UHGV-1989568_44	eggNOG-mapper	411473.RUMCAL_00402	endonuclease activity	NA
UHGV-1989568_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1989568_44	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-1989568_44	Structural annotation	PF12844, NF007257, COG3655	NA	NA
UHGV-1989568_46	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-1989568_46	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-1989568_46	UniRef90	UniRef90_A0A1S9CT51	Radical SAM protein	NA
UHGV-1989568_46	eggNOG-mapper	610130.Closa_0809	Radical SAM domain protein	NA
UHGV-1989568_46	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-1989568_46	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1989568_46	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-1989568_47	UniRef90	UniRef90_R5UXR0	Bacterial Ig-like domain group 2	NA
UHGV-1989568_47	eggNOG-mapper	641112.ACOK01000094_gene1031	FMN_bind	NA
UHGV-1989568_47	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1989568_47	Pfam	PF00746	LPXTG cell wall anchor motif	Gram_pos_anchor
UHGV-1989568_47	COG	COG2138	Sirohydrochlorin ferrochelatase	NA
UHGV-1989568_48	eggNOG-mapper	1536774.H70357_09025	NA	NA
UHGV-1989568_49	UniRef90	UniRef90_A0A352SGF8	AAA family ATPase (Fragment)	NA
UHGV-1989568_49	eggNOG-mapper	411473.RUMCAL_03147	PD-(D/E)XK nuclease superfamily	NA
UHGV-1989568_49	Pfam	PF08011	PD-(D/E)XK nuclease superfamily	PDDEXK_9
UHGV-1989568_49	COG	COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	NA
UHGV-1989568_50	UniRef90	UniRef90_A0A1C5ZVL0	Predicted AAA-ATPase	NA
UHGV-1989568_50	eggNOG-mapper	641112.ACOK01000118_gene1398	PD-(D/E)XK nuclease superfamily	NA
UHGV-1989568_50	Pfam	PF09820	Predicted AAA-ATPase	AAA-ATPase_like
UHGV-1989568_50	COG	COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	NA
UHGV-1989568_53	KOfam	K07492	K07492; putative transposase	NA
UHGV-1989568_53	PHROG	phrog_6657	NA	unknown function
UHGV-1989568_53	UniRef90	UniRef90_A0A1Q6Q271	DDE_Tnp_1 domain-containing protein	NA
UHGV-1989568_53	eggNOG-mapper	686340.Metal_1861	Transposase DDE domain	NA
UHGV-1989568_53	Pfam	PF13340	NA	DUF4096
UHGV-1989568_53	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-1989568_53	NCBIFam	NF033580.1	IS5 family transposase	NA
UHGV-1989568_53	COG	COG3293	Transposase	NA
UHGV-1989568_55	KOfam	K14059	int; integrase	NA
UHGV-1989568_55	UniRef90	UniRef90_A0A373UPI6	Site-specific integrase	NA
UHGV-1989568_55	eggNOG-mapper	1514668.JOOA01000001_gene661	Belongs to the 'phage' integrase family	NA
UHGV-1989568_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1989568_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1989568_57	eggNOG-mapper	1410661.JNKW01000010_gene978	Forkhead associated domain	NA
UHGV-1989568_57	Pfam	PF19909	NA	DUF6382
UHGV-1989568_57	COG	COG1716	Forkhead associated (FHA) domain, binds pSer, pThr, pTyr	NA