UHGV-1989717

Genome information

Genome length 33,172 bps

CDS count 48

Completeness 78.64% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-1989717
vOTU ID	vOTU-022609
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023494\|Ga0257057_100312\|provirus_3_33174
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.06
Jumbo phage	No

Genome content
Genome length	33,172 bps
GC content	43.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.99%
Average CDS length	648.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1989717_1	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-1989717_1	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-1989717_2	PHROG	phrog_6616	tail protein	tail
UHGV-1989717_2	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1989717_2	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-1989717_2	COG	COG4926	Phage-related protein	NA
UHGV-1989717_2	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-1989717_3	PHROG	phrog_1401	NA	unknown function
UHGV-1989717_3	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-1989717_3	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-1989717_3	Structural annotation	PF07761	NA	NA
UHGV-1989717_4	PHROG	phrog_1194	NA	unknown function
UHGV-1989717_4	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-1989717_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1989717_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1989717_5	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-1989717_5	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-1989717_5	COG	COG5283	Phage-related tail protein	NA
UHGV-1989717_7	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1989717_7	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-1989717_7	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-1989717_7	Structural annotation	PF19591	NA	NA
UHGV-1989717_8	PHROG	phrog_158	major tail protein	tail
UHGV-1989717_8	UniRef90	UniRef90_UPI0016452D03	phage tail protein	NA
UHGV-1989717_8	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-1989717_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1989717_9	PHROG	phrog_78	tail terminator	connector
UHGV-1989717_9	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-1989717_9	Structural annotation	PF05657	NA	NA
UHGV-1989717_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1989717_10	UniRef90	UniRef90_UPI001645FB65	HK97 gp10 family phage protein	NA
UHGV-1989717_10	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1989717_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1989717_10	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1989717_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1989717_11	PHROG	phrog_2168	NA	unknown function
UHGV-1989717_11	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-1989717_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1989717_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1989717_12	UniRef90	UniRef90_A0A1C5LAU6	Phage gp6-like head-tail connector protein	NA
UHGV-1989717_12	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-1989717_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1989717_12	Structural annotation	PF05135	NA	NA
UHGV-1989717_13	PHROG	phrog_2724	NA	unknown function
UHGV-1989717_13	UniRef90	UniRef90_UPI001645E209	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1989717_13	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1989717_13	COG	COG0261	Ribosomal protein L21	NA
UHGV-1989717_13	Structural annotation	PF07498	NA	NA
UHGV-1989717_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-1989717_14	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-1989717_14	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-1989717_14	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1989717_15	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1989717_15	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-1989717_15	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-1989717_15	Pfam	PF14265	NA	DUF4355
UHGV-1989717_15	Structural annotation	PF14265	NA	NA
UHGV-1989717_16	Structural annotation	PF01281	NA	NA
UHGV-1989717_17	PHROG	phrog_918	NA	unknown function
UHGV-1989717_17	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-1989717_17	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-1989717_17	Pfam	PF19791	NA	DUF6275
UHGV-1989717_17	Structural annotation	PF19791	NA	NA
UHGV-1989717_18	PHROG	phrog_1048	NA	unknown function
UHGV-1989717_18	UniRef90	UniRef90_A0A373P4J3	NA	NA
UHGV-1989717_18	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1989717_18	Pfam	PF11195	NA	DUF2829
UHGV-1989717_18	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1989717_18	Structural annotation	PF11195	NA	NA
UHGV-1989717_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1989717_20	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1989717_20	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-1989717_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1989717_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1989717_20	COG	COG2369	NA	NA
UHGV-1989717_20	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1989717_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-1989717_21	UniRef90	UniRef90_A0A1G5F2B6	Phage portal protein, SPP1 family	NA
UHGV-1989717_21	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-1989717_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1989717_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1989717_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1989717_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1989717_22	PHROG	phrog_10250	NA	unknown function
UHGV-1989717_22	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-1989717_22	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1989717_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1989717_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1989717_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1989717_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1989717_23	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1989717_23	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-1989717_23	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-1989717_23	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1989717_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1989717_23	COG	COG5484	NA	NA
UHGV-1989717_23	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-1989717_24	Structural annotation	PF07705, MF_00791, NF003967, COG2967	NA	NA
UHGV-1989717_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1989717_25	UniRef90	UniRef90_A0A1C5VKJ4	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1989717_25	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-1989717_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1989717_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1989717_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1989717_26	PHROG	phrog_6568	NA	unknown function
UHGV-1989717_32	PHROG	phrog_7566	NA	unknown function
UHGV-1989717_32	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-1989717_33	PHROG	phrog_17690	NA	unknown function
UHGV-1989717_33	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-1989717_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1989717_34	PHROG	phrog_15077	NA	unknown function
UHGV-1989717_34	UniRef90	UniRef90_A0A1C5VK28	ParB-like nuclease domain	NA
UHGV-1989717_34	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-1989717_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1989717_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1989717_34	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1989717_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1989717_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1989717_35	UniRef90	UniRef90_A0A1C5VK85	Sporulation initiation inhibitor protein soj	NA
UHGV-1989717_35	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-1989717_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-1989717_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1989717_35	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1989717_37	UniRef90	UniRef90_A0A1C5PHR0	Ribonuclease H	NA
UHGV-1989717_37	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-1989717_37	COG	COG0328	Ribonuclease HI	NA
UHGV-1989717_37	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1989717_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1989717_38	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-1989717_38	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-1989717_38	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1989717_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1989717_42	UniRef90	UniRef90_UPI00073F58F1	helix-turn-helix domain-containing protein	NA
UHGV-1989717_42	eggNOG-mapper	903814.ELI_4514	Helix-turn-helix XRE-family like proteins	NA
UHGV-1989717_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1989717_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1989717_42	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1989717_43	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1989717_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1989717_43	UniRef90	UniRef90_UPI00073F908F	helix-turn-helix domain-containing protein	NA
UHGV-1989717_43	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-1989717_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1989717_43	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1989717_43	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1989717_44	PHROG	phrog_87	metallo-protease	other
UHGV-1989717_44	UniRef90	UniRef90_UPI000E449709	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1989717_44	eggNOG-mapper	411459.RUMOBE_00962	Zn peptidase	NA
UHGV-1989717_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1989717_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1989717_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1989717_45	UniRef90	UniRef90_A0A1C5W1A8	PBECR3 domain-containing protein	NA
UHGV-1989717_45	eggNOG-mapper	748727.CLJU_c39230	NA	NA
UHGV-1989717_45	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1989717_45	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-1989717_46	PHROG	phrog_1847	NA	unknown function
UHGV-1989717_46	UniRef90	UniRef90_UPI00156E489C	NA	NA
UHGV-1989717_46	eggNOG-mapper	608534.GCWU000341_02322	T5orf172	NA
UHGV-1989717_46	Pfam	PF13250	NA	DUF4041
UHGV-1989717_46	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-1989717_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1989717_46	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-1989717_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1989717_47	PHROG	phrog_95	integrase	integration and excision
UHGV-1989717_47	UniRef90	UniRef90_A0A415FHQ5	Recombinase family protein	NA
UHGV-1989717_47	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-1989717_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1989717_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-1989717_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1989717_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1989717_47	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1989717_48	PHROG	phrog_28785	NA	unknown function
UHGV-1989717_48	UniRef90	UniRef90_A0A1C5UMB1	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-1989717_48	eggNOG-mapper	1121115.AXVN01000073_gene2025	NA	NA
UHGV-1989717_48	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA