UHGV-1989867

Genome information

Genome length 36,077 bps

CDS count 37

Completeness 93.78% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1989867
vOTU ID	vOTU-014302
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300028990\|Ga0169622_100296
BioSample	SAMEA2580041
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.14
Jumbo phage	No

Genome content
Genome length	36,077 bps
GC content	30.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.63%
Average CDS length	884.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1989867_1	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-1989867_1	UniRef90	UniRef90_A0A8H9QMS9	Ribbon-helix-helix domain-containing protein	NA
UHGV-1989867_1	eggNOG-mapper	632245.CLP_2676	Ribbon-helix-helix domain	NA
UHGV-1989867_1	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-1989867_1	Structural annotation	PF12651, COG4710	NA	NA
UHGV-1989867_2	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1989867_2	UniRef90	UniRef90_UPI00189FE04E	helix-turn-helix domain-containing protein	NA
UHGV-1989867_2	eggNOG-mapper	632245.CLP_2588	NA	NA
UHGV-1989867_2	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1989867_4	PHROG	phrog_25339	NA	unknown function
UHGV-1989867_4	UniRef90	UniRef90_UPI001C10F62C	RNA dependent RNA polymerase	NA
UHGV-1989867_4	eggNOG-mapper	536233.CLO_2537	NA	NA
UHGV-1989867_4	Structural annotation	PF05183	NA	NA
UHGV-1989867_5	UniRef90	UniRef90_A0A2X2Y960	NA	NA
UHGV-1989867_5	Pfam	PF18903	NA	DUF5659
UHGV-1989867_6	KOfam	K07012	cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]	NA
UHGV-1989867_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1989867_6	UniRef90	UniRef90_A0A6B4ZJA3	DNA helicase	NA
UHGV-1989867_6	eggNOG-mapper	646529.Desaci_2022	Type III restriction enzyme, res subunit	NA
UHGV-1989867_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1989867_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1989867_6	Structural annotation	PF02399, MF_00964, NF003419, COG0513	NA	NA
UHGV-1989867_9	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1989867_9	UniRef90	UniRef90_UPI000D9B3F85	Rha family transcriptional regulator	NA
UHGV-1989867_9	eggNOG-mapper	572544.Ilyop_1031	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1989867_9	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1989867_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1989867_9	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1989867_9	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-1989867_10	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1989867_10	UniRef90	UniRef90_C3WAW7	HNH endonuclease domain family protein	NA
UHGV-1989867_10	eggNOG-mapper	632245.CLP_2922	NA	NA
UHGV-1989867_11	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1989867_11	UniRef90	UniRef90_A0A1C6E860	Phage terminase, small subunit	NA
UHGV-1989867_11	eggNOG-mapper	1196031.ALEG01000039_gene1811	Phage terminase, small subunit	NA
UHGV-1989867_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1989867_11	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1989867_11	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1989867_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1989867_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1989867_12	UniRef90	UniRef90_K6DIF2	Phage terminase large subunit	NA
UHGV-1989867_12	eggNOG-mapper	1196031.ALEG01000039_gene1812	Terminase	NA
UHGV-1989867_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1989867_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1989867_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1989867_12	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1989867_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-1989867_13	UniRef90	UniRef90_A0A1S1V8J7	Phage portal protein	NA
UHGV-1989867_13	eggNOG-mapper	1285586.H131_21312	Portal protein	NA
UHGV-1989867_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1989867_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1989867_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1989867_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1989867_14	KOfam	K06904	NA	NA
UHGV-1989867_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1989867_14	UniRef90	UniRef90_L1QEZ9	Phage prohead protease, HK97 family	NA
UHGV-1989867_14	eggNOG-mapper	545697.HMPREF0216_01743	Phage prohead protease, HK97 family	NA
UHGV-1989867_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1989867_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1989867_14	COG	COG3740	Phage head maturation protease	NA
UHGV-1989867_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1989867_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1989867_15	UniRef90	UniRef90_K6D6D8	Phage major capsid protein	NA
UHGV-1989867_15	eggNOG-mapper	1196031.ALEG01000039_gene1816	Phage capsid family	NA
UHGV-1989867_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1989867_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1989867_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1989867_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1989867_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1989867_16	UniRef90	UniRef90_A0A416J1B1	Phage gp6-like head-tail connector protein	NA
UHGV-1989867_16	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-1989867_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1989867_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1989867_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1989867_17	UniRef90	UniRef90_A0A1I7G2Z2	Head-tail adaptor	NA
UHGV-1989867_17	eggNOG-mapper	632245.CLP_2692	Phage head-tail joining protein	NA
UHGV-1989867_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1989867_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1989867_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1989867_18	eggNOG-mapper	632245.CLP_2691	NA	NA
UHGV-1989867_18	Structural annotation	TIGR01725	NA	NA
UHGV-1989867_19	PHROG	phrog_78	tail terminator	connector
UHGV-1989867_19	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-1989867_19	Structural annotation	PF05657	NA	NA
UHGV-1989867_20	PHROG	phrog_88	major tail protein	tail
UHGV-1989867_20	UniRef90	UniRef90_UPI001F22BC6F	phage tail protein	NA
UHGV-1989867_20	eggNOG-mapper	1111121.HMPREF1247_0016	phage major tail protein, phi13 family	NA
UHGV-1989867_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1989867_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1989867_21	eggNOG-mapper	536233.CLO_1369	NA	NA
UHGV-1989867_21	Structural annotation	PF11836	NA	NA
UHGV-1989867_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1989867_22	eggNOG-mapper	1209989.TepiRe1_2595	Evidence 4 Homologs of previously reported genes of	NA
UHGV-1989867_22	COG	COG5283	Phage-related tail protein	NA
UHGV-1989867_23	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1989867_23	UniRef90	UniRef90_A0A6B5A360	HNH endonuclease	NA
UHGV-1989867_23	eggNOG-mapper	315730.BcerKBAB4_3417	regulation of methylation-dependent chromatin silencing	NA
UHGV-1989867_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1989867_23	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-1989867_23	Structural annotation	PF05766	NA	NA
UHGV-1989867_24	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1989867_24	UniRef90	UniRef90_UPI0018AC3B12	phage tail tape measure protein	NA
UHGV-1989867_24	eggNOG-mapper	1211817.CCAT010000049_gene2507	phage tail tape measure protein	NA
UHGV-1989867_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1989867_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1989867_24	COG	COG5283	Phage-related tail protein	NA
UHGV-1989867_24	Structural annotation	TIGR01760	NA	NA
UHGV-1989867_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1989867_25	UniRef90	UniRef90_A0A0E1KYU8	Phage tail family protein	NA
UHGV-1989867_25	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-1989867_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1989867_25	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1989867_25	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1989867_26	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1989867_26	UniRef90	UniRef90_A0A0E1KW44	Prophage_tail domain-containing protein	NA
UHGV-1989867_26	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1989867_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1989867_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1989867_26	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1989867_27	PHROG	phrog_16573	NA	unknown function
UHGV-1989867_27	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-1989867_27	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1989867_27	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1989867_29	PHROG	phrog_11032	tail protein	tail
UHGV-1989867_31	Structural annotation	PF08005, PF19972	NA	NA
UHGV-1989867_33	PHROG	phrog_9829	NA	unknown function
UHGV-1989867_33	UniRef90	UniRef90_R6GPV4	Imm	NA
UHGV-1989867_34	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1989867_34	PHROG	phrog_12727	endolysin	lysis
UHGV-1989867_34	UniRef90	UniRef90_UPI001C8B8D79	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1989867_34	eggNOG-mapper	1414720.CBYM010000014_gene2742	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1989867_34	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1989867_34	Pfam	PF05036	SPOR domain	SPOR
UHGV-1989867_34	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1989867_34	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1989867_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1989867_36	PHROG	phrog_95	integrase	integration and excision
UHGV-1989867_36	UniRef90	UniRef90_A0A1C5S0B4	Resolvase, N terminal domain	NA
UHGV-1989867_36	eggNOG-mapper	1295642.H839_07964	Resolvase, N terminal domain	NA
UHGV-1989867_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1989867_36	Pfam	PF07508	Recombinase	Recombinase
UHGV-1989867_36	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1989867_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1989867_36	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1989867_37	KOfam	K10771	APEX1; AP endonuclease 1 [EC:4.2.99.18]	NA
UHGV-1989867_37	PHROG	phrog_19169	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1989867_37	UniRef90	UniRef90_A0A174FF75	Exodeoxyribonuclease III	NA
UHGV-1989867_37	eggNOG-mapper	1414720.CBYM010000001_gene926	exodeoxyribonuclease III	NA
UHGV-1989867_37	Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos
UHGV-1989867_37	NCBIFam	TIGR00633.1	exodeoxyribonuclease III	NA
UHGV-1989867_37	COG	COG0708	Exonuclease III	NA