UHGV-1990844

Genome information

Genome length 34,758 bps

CDS count 41

Completeness 75.51% (medium-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-1990844
vOTU ID	vOTU-041341
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023495\|Ga0257060_10110\|provirus_2_34759
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.51
Jumbo phage	No

Genome content
Genome length	34,758 bps
GC content	49.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.42%
Average CDS length	769.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1990844_1	PHROG	phrog_1220	head protein	head and packaging
UHGV-1990844_1	eggNOG-mapper	1121087.AUCK01000002_gene2490	NA	NA
UHGV-1990844_1	Structural annotation	PF20747	NA	NA
UHGV-1990844_2	PHROG	phrog_538	minor tail protein	tail
UHGV-1990844_2	UniRef90	UniRef90_UPI0006C82C74	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1990844_2	eggNOG-mapper	431943.CKL_4055	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1990844_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1990844_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1990844_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1990844_3	UniRef90	UniRef90_R6UHM6	Phage-related putative tail protein	NA
UHGV-1990844_3	eggNOG-mapper	1460635.JCM19038_3477	Phage tail protein	NA
UHGV-1990844_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1990844_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1990844_3	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1990844_4	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1990844_4	eggNOG-mapper	1291050.JAGE01000002_gene3296	Phage-related minor tail protein	NA
UHGV-1990844_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1990844_6	eggNOG-mapper	1211817.CCAT010000039_gene118	NA	NA
UHGV-1990844_9	PHROG	phrog_88	major tail protein	tail
UHGV-1990844_9	UniRef90	UniRef90_R6VAJ3	Phage major tail protein phi13 family	NA
UHGV-1990844_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1990844_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1990844_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1990844_10	Structural annotation	PF12691	NA	NA
UHGV-1990844_11	UniRef90	UniRef90_A0A7G5FBV2	HK97 gp10 family phage protein	NA
UHGV-1990844_11	eggNOG-mapper	86416.Clopa_3372	NA	NA
UHGV-1990844_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1990844_12	Structural annotation	PF10665, MF_01370, TIGR01563, COG5614	NA	NA
UHGV-1990844_13	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-1990844_13	eggNOG-mapper	632518.Calow_0834	NA	NA
UHGV-1990844_13	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-1990844_13	Structural annotation	PF20557	NA	NA
UHGV-1990844_14	PHROG	phrog_247	major head protein	head and packaging
UHGV-1990844_14	UniRef90	UniRef90_D3ANA7	Putative coat protein	NA
UHGV-1990844_14	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-1990844_14	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1990844_15	Structural annotation	PF06810	NA	NA
UHGV-1990844_18	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-1990844_18	UniRef90	UniRef90_R6RAU0	Phage minor capsid protein 2	NA
UHGV-1990844_18	eggNOG-mapper	86416.Clopa_2539	Phage minor capsid protein 2	NA
UHGV-1990844_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1990844_18	Pfam	PF21814	NA	DUF6883
UHGV-1990844_18	Structural annotation	PF06152, PF21814	NA	NA
UHGV-1990844_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-1990844_19	UniRef90	UniRef90_UPI00067FAA9B	phage portal protein	NA
UHGV-1990844_19	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-1990844_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1990844_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1990844_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1990844_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1990844_20	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-1990844_20	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-1990844_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1990844_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1990844_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1990844_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1990844_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1990844_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1990844_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1990844_21	UniRef90	UniRef90_A0A355D6H0	Terminase small subunit	NA
UHGV-1990844_21	eggNOG-mapper	1121344.JHZO01000003_gene978	Terminase small subunit	NA
UHGV-1990844_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1990844_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1990844_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1990844_22	PHROG	phrog_3634	NA	unknown function
UHGV-1990844_22	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-1990844_22	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-1990844_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1990844_23	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-1990844_23	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-1990844_23	Structural annotation	PF02996	NA	NA
UHGV-1990844_24	UniRef90	UniRef90_A0A1L5KK68	Cytochrome oxidase maturation protein cbb3-type	NA
UHGV-1990844_26	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1990844_26	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1990844_26	UniRef90	UniRef90_UPI001F21C29B	DEAD/DEAH box helicase	NA
UHGV-1990844_26	eggNOG-mapper	1203606.HMPREF1526_00244	snf2 family	NA
UHGV-1990844_26	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1990844_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1990844_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1990844_26	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1990844_27	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1990844_27	UniRef90	UniRef90_A0A412AVC3	VRR-NUC domain-containing protein	NA
UHGV-1990844_27	eggNOG-mapper	693746.OBV_43140	VRR_NUC	NA
UHGV-1990844_27	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1990844_28	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1990844_28	UniRef90	UniRef90_UPI000A05BA9F	virulence-associated E family protein	NA
UHGV-1990844_28	eggNOG-mapper	1120971.AUCA01000043_gene1172	Virulence-associated protein E	NA
UHGV-1990844_28	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1990844_28	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1990844_28	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1990844_29	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1990844_29	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1990844_29	UniRef90	UniRef90_UPI001F324F74	DNA polymerase	NA
UHGV-1990844_29	eggNOG-mapper	1408437.JNJN01000045_gene604	DNA polymerase	NA
UHGV-1990844_29	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1990844_29	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1990844_29	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1990844_30	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1990844_30	UniRef90	UniRef90_UPI001F290260	NA	NA
UHGV-1990844_30	eggNOG-mapper	1120746.CCNL01000014_gene2087	NA	NA
UHGV-1990844_30	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1990844_30	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1990844_31	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1990844_31	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1990844_31	UniRef90	UniRef90_UPI0004B33BAB	NA	NA
UHGV-1990844_31	eggNOG-mapper	1120746.CCNL01000014_gene2086	Belongs to the helicase family. UvrD subfamily	NA
UHGV-1990844_31	Pfam	PF10926	NA	DUF2800
UHGV-1990844_31	COG	COG2887	RecB family exonuclease	NA
UHGV-1990844_31	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1990844_32	PHROG	phrog_18562	NA	unknown function
UHGV-1990844_32	eggNOG-mapper	679201.HMPREF9334_00305	NA	NA
UHGV-1990844_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1990844_35	UniRef90	UniRef90_A0A1C7GMQ0	Transcriptional regulator	NA
UHGV-1990844_35	eggNOG-mapper	665956.HMPREF1032_03112	sequence-specific DNA binding	NA
UHGV-1990844_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1990844_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1990844_35	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1990844_36	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-1990844_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1990844_36	UniRef90	UniRef90_A0A316QDB5	HTH cro/C1-type domain-containing protein	NA
UHGV-1990844_36	eggNOG-mapper	865861.AZSU01000002_gene2597	Transcriptional	NA
UHGV-1990844_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1990844_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1990844_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1990844_36	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-1990844_37	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-1990844_37	eggNOG-mapper	1123263.AUKY01000072_gene2115	NA	NA
UHGV-1990844_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1990844_37	Structural annotation	PF06152	NA	NA
UHGV-1990844_38	UniRef90	UniRef90_UPI00163A3CDC	helix-turn-helix domain-containing protein	NA
UHGV-1990844_38	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1990844_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1990844_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1990844_39	UniRef90	UniRef90_A0A542AIQ2	Helix-turn-helix protein	NA
UHGV-1990844_39	eggNOG-mapper	1196029.ALIM01000022_gene1000	Helix-turn-helix XRE-family like proteins	NA
UHGV-1990844_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1990844_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1990844_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1990844_40	PHROG	phrog_11900	NA	unknown function
UHGV-1990844_40	UniRef90	UniRef90_A0A644YQ24	Fido domain-containing protein	NA
UHGV-1990844_40	eggNOG-mapper	1123511.KB905852_gene3375	filamentation induced by cAMP protein Fic	NA
UHGV-1990844_40	Pfam	PF02661	Fic/DOC family	Fic
UHGV-1990844_40	COG	COG3177	Fic family protein	NA
UHGV-1990844_40	Structural annotation	PF02661, TIGR02613, COG3177	NA	NA
UHGV-1990844_41	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1990844_41	PHROG	phrog_95	integrase	integration and excision
UHGV-1990844_41	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-1990844_41	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-1990844_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1990844_41	Pfam	PF07508	Recombinase	Recombinase
UHGV-1990844_41	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1990844_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA