UHGV-1992295

Genome information

Genome length 31,057 bps

CDS count 40

Completeness 79.28% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-1992295
vOTU ID	vOTU-024265
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023545\|Ga0257041_100564\|provirus_8513_42699
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.49
Jumbo phage	No

Genome content
Genome length	31,057 bps
GC content	35.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	96.06%
Average CDS length	751.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1992295_1	PHROG	phrog_263	holin	lysis
UHGV-1992295_1	UniRef90	UniRef90_A0A316PF34	Phage holin	NA
UHGV-1992295_1	eggNOG-mapper	1158607.UAU_01779	SPP1 phage holin	NA
UHGV-1992295_1	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1992295_1	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1992295_1	Structural annotation	PF04688	NA	NA
UHGV-1992295_3	KOfam	K01190	lacZ; beta-galactosidase [EC:3.2.1.23]	NA
UHGV-1992295_3	UniRef90	UniRef90_A0A316PEZ7	Beta-galactosidase	NA
UHGV-1992295_3	eggNOG-mapper	742733.HMPREF9469_00974	Belongs to the glycosyl hydrolase 2 family	NA
UHGV-1992295_3	PADLOC	CARF_m8--CARF_Beta-galactosidase_LolE_TM_CARF_m8--CARF_Beta-galactosidase_LolE_TM	NA	CRISPR-CAS
UHGV-1992295_3	Pfam	PF02837	Glycosyl hydrolases family 2, sugar binding domain	Glyco_hydro_2_N
UHGV-1992295_3	Pfam	PF00703	Glycosyl hydrolases family 2	Glyco_hydro_2
UHGV-1992295_3	Pfam	PF02836	Glycosyl hydrolases family 2, TIM barrel domain	Glyco_hydro_2_C
UHGV-1992295_3	COG	COG3250	Beta-galactosidase/beta-glucuronidase	NA
UHGV-1992295_4	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1992295_4	COG	COG3291	NA	NA
UHGV-1992295_5	PHROG	phrog_521	tail protein	tail
UHGV-1992295_5	UniRef90	UniRef90_A0A3R6U2T5	NA	NA
UHGV-1992295_5	eggNOG-mapper	1243664.CAVL020000019_gene3748	NA	NA
UHGV-1992295_5	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1992295_5	COG	COG3778	NA	NA
UHGV-1992295_6	PHROG	phrog_6	baseplate protein	tail
UHGV-1992295_6	UniRef90	UniRef90_A0A316PC92	Baseplate_J domain-containing protein	NA
UHGV-1992295_6	eggNOG-mapper	1449126.JQKL01000051_gene3155	Baseplate J-like protein	NA
UHGV-1992295_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1992295_6	COG	COG3299	NA	NA
UHGV-1992295_6	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1992295_7	PHROG	phrog_120	baseplate protein	tail
UHGV-1992295_7	UniRef90	UniRef90_A0A316PIQ0	NA	NA
UHGV-1992295_7	eggNOG-mapper	1123239.KB898628_gene3247	NA	NA
UHGV-1992295_7	Pfam	PF10934	NA	DUF2634
UHGV-1992295_7	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1992295_7	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1992295_8	Pfam	PF10844	NA	DUF2577
UHGV-1992295_8	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-1992295_9	PHROG	phrog_400	tail protein	tail
UHGV-1992295_9	UniRef90	UniRef90_A0A316PG95	Amidase_5 domain-containing protein	NA
UHGV-1992295_9	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-1992295_9	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1992295_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1992295_9	Structural annotation	PF14594, NF033848, NF033742, COG4379	NA	NA
UHGV-1992295_10	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1992295_10	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1992295_10	UniRef90	UniRef90_A0A316PEX8	Pilus assembly protein HicB	NA
UHGV-1992295_10	eggNOG-mapper	1151292.QEW_3299	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1992295_10	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1992295_10	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1992295_10	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1992295_11	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1992295_11	UniRef90	UniRef90_A0A316PF44	Addiction module toxin, HicA family	NA
UHGV-1992295_11	eggNOG-mapper	1235793.C809_01889	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1992295_11	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1992295_11	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1992295_11	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1992295_12	PHROG	phrog_23201	NA	unknown function
UHGV-1992295_12	UniRef90	UniRef90_A0A316PBC2	CHAP domain-containing protein	NA
UHGV-1992295_12	eggNOG-mapper	883156.HMPREF9282_00961	LysM domain	NA
UHGV-1992295_12	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1992295_13	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1992295_13	UniRef90	UniRef90_A0A316PF07	TMP_3 domain-containing protein	NA
UHGV-1992295_13	eggNOG-mapper	1408823.AXUS01000024_gene2728	tape measure	NA
UHGV-1992295_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1992295_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1992295_13	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1992295_14	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-1992295_14	UniRef90	UniRef90_R6N2M1	Phage XkdN-like protein	NA
UHGV-1992295_14	eggNOG-mapper	1286171.EAL2_c11130	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1992295_14	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1992295_14	Structural annotation	PF08890	NA	NA
UHGV-1992295_15	PHROG	phrog_365	tail protein	tail
UHGV-1992295_15	UniRef90	UniRef90_A0A316PCV3	Terminase	NA
UHGV-1992295_15	eggNOG-mapper	445972.ANACOL_00545	Phage tail tube protein	NA
UHGV-1992295_15	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1992295_15	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1992295_16	PHROG	phrog_1480	tail sheath	tail
UHGV-1992295_16	UniRef90	UniRef90_A0A316PCB9	Phage tail sheath protein	NA
UHGV-1992295_16	eggNOG-mapper	1449126.JQKL01000051_gene3164	Phage tail sheath protein subtilisin-like domain	NA
UHGV-1992295_16	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1992295_16	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1992295_16	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1992295_17	PHROG	phrog_525	NA	unknown function
UHGV-1992295_17	Pfam	PF20765	NA	DUF6838
UHGV-1992295_17	Structural annotation	PF20765, COG3167	NA	NA
UHGV-1992295_18	UniRef90	UniRef90_A0A7X6VIF7	HK97 gp10 family phage protein	NA
UHGV-1992295_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1992295_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1992295_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-1992295_19	UniRef90	UniRef90_A0A416D170	Head-tail adaptor protein	NA
UHGV-1992295_19	eggNOG-mapper	1408324.JNJK01000006_gene1384	Phage head-tail joining protein	NA
UHGV-1992295_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1992295_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1992295_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1992295_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1992295_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1992295_20	UniRef90	UniRef90_A0A316PEY8	Phage major capsid protein	NA
UHGV-1992295_20	eggNOG-mapper	1567013.A0A0A7RTL2_9CAUD	peptidase activity	NA
UHGV-1992295_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1992295_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1992295_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1992295_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1992295_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1992295_21	UniRef90	UniRef90_A0A316PF55	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1992295_21	eggNOG-mapper	1437363.A0A090C6U3_9CAUD	Clp protease	NA
UHGV-1992295_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1992295_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1992295_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-1992295_22	UniRef90	UniRef90_A0A316PCI7	Phage portal protein	NA
UHGV-1992295_22	eggNOG-mapper	1286171.EAL2_c11040	Phage portal protein	NA
UHGV-1992295_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1992295_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1992295_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1992295_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1992295_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1992295_23	UniRef90	UniRef90_W8U652	Putative terminase large subunit 2	NA
UHGV-1992295_23	eggNOG-mapper	1286171.EAL2_c11030	Phage Terminase	NA
UHGV-1992295_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1992295_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1992295_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1992295_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1992295_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1992295_24	UniRef90	UniRef90_A0A316PT95	Phage terminase small subunit P27 family	NA
UHGV-1992295_24	eggNOG-mapper	1286171.EAL2_c11020	Phage terminase, small subunit	NA
UHGV-1992295_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1992295_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1992295_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1992295_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1992295_25	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1992295_25	UniRef90	UniRef90_UPI00174736FC	head-tail connector protein	NA
UHGV-1992295_25	eggNOG-mapper	1329516.JPST01000017_gene425	Phage gp6-like head-tail connector protein	NA
UHGV-1992295_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1992295_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1992295_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1992295_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1992295_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1992295_26	UniRef90	UniRef90_A0A316PCD1	HNH endonuclease	NA
UHGV-1992295_26	eggNOG-mapper	1295642.H839_15988	HNH nucleases	NA
UHGV-1992295_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1992295_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1992295_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1992295_27	PHROG	phrog_216	integrase	integration and excision
UHGV-1992295_27	UniRef90	UniRef90_A0A316PIS3	Site-specific integrase	NA
UHGV-1992295_27	eggNOG-mapper	1286171.EAL2_c11000	Phage integrase family	NA
UHGV-1992295_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1992295_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1992295_27	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1992295_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1992295_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1992295_29	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1992295_29	UniRef90	UniRef90_A0A316PGC0	RNA-binding protein	NA
UHGV-1992295_29	eggNOG-mapper	457396.CSBG_01038	NA	NA
UHGV-1992295_29	Pfam	PF12961	NA	DUF3850
UHGV-1992295_29	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1992295_32	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1992295_32	UniRef90	UniRef90_A0A2K9P078	NA	NA
UHGV-1992295_32	eggNOG-mapper	1297570.MESS4_510075	NA	NA
UHGV-1992295_32	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1992295_32	Structural annotation	PF18909	NA	NA
UHGV-1992295_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1992295_34	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1992295_34	UniRef90	UniRef90_A0A316PF27	Methyltransferase	NA
UHGV-1992295_34	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-1992295_34	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1992295_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1992295_34	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1992295_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1992295_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1992295_36	UniRef90	UniRef90_A0A316PCW7	DNA helicase	NA
UHGV-1992295_36	eggNOG-mapper	1408823.AXUS01000015_gene1412	Participates in initiation and elongation during chromosome replication	NA
UHGV-1992295_36	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1992295_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1992295_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-1992295_36	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1992295_37	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1992295_37	UniRef90	UniRef90_A0A191ZDG9	Putative replication protein	NA
UHGV-1992295_37	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-1992295_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1992295_37	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-1992295_39	PHROG	phrog_3205	NA	unknown function
UHGV-1992295_39	eggNOG-mapper	1296659.S5MU47_9CAUD	NA	NA