UHGV-1992297

Genome information

Genome length 41,888 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1992297
vOTU ID	vOTU-063705
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023545\|Ga0257041_100465\|provirus_6932_48819
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.21
Jumbo phage	No

Genome content
Genome length	41,888 bps
GC content	50.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.93%
Average CDS length	567.72 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1992297_1	KOfam	K14059	int; integrase	NA
UHGV-1992297_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1992297_1	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-1992297_1	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1992297_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1992297_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1992297_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1992297_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1992297_2	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1992297_2	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1992297_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1992297_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1992297_2	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1992297_5	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1992297_5	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1992297_5	eggNOG-mapper	1121333.JMLH01000063_gene1384	SWIM zinc finger	NA
UHGV-1992297_5	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1992297_5	Structural annotation	PF00929, PF00533, MF_00157, NF004844, COG0847	NA	NA
UHGV-1992297_9	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-1992297_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1992297_10	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-1992297_10	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1992297_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1992297_10	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1992297_11	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-1992297_11	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1992297_14	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-1992297_16	PHROG	phrog_32852	NA	unknown function
UHGV-1992297_18	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-1992297_18	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1992297_21	PHROG	phrog_14970	NA	unknown function
UHGV-1992297_21	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1992297_21	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1992297_22	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1992297_22	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1992297_22	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1992297_23	Structural annotation	PF09723	NA	NA
UHGV-1992297_25	PHROG	phrog_7566	NA	unknown function
UHGV-1992297_25	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1992297_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1992297_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1992297_26	UniRef90	UniRef90_A0A2A7ALU9	Single-stranded DNA-binding protein	NA
UHGV-1992297_26	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1992297_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1992297_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1992297_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1992297_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1992297_26	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1992297_27	PHROG	phrog_6969	NA	unknown function
UHGV-1992297_27	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-1992297_27	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1992297_27	Pfam	PF19481	NA	DUF6017
UHGV-1992297_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1992297_27	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-1992297_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1992297_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1992297_29	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-1992297_29	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1992297_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-1992297_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1992297_29	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1992297_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1992297_30	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1992297_30	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-1992297_30	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1992297_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1992297_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1992297_30	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-1992297_31	Structural annotation	PF04545	NA	NA
UHGV-1992297_32	PHROG	phrog_30559	NA	unknown function
UHGV-1992297_36	PHROG	phrog_3136	NA	unknown function
UHGV-1992297_36	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-1992297_36	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1992297_36	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1992297_36	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-1992297_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1992297_38	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-1992297_38	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1992297_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1992297_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1992297_39	PHROG	phrog_13845	NA	unknown function
UHGV-1992297_39	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-1992297_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1992297_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1992297_40	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-1992297_40	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1992297_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1992297_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1992297_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1992297_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-1992297_41	UniRef90	UniRef90_A0A2A7AM75	Phage portal protein	NA
UHGV-1992297_41	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1992297_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1992297_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1992297_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1992297_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1992297_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1992297_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1992297_42	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-1992297_42	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1992297_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1992297_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1992297_42	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1992297_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-1992297_43	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-1992297_43	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1992297_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1992297_43	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1992297_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1992297_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1992297_43	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1992297_44	PHROG	phrog_749	NA	unknown function
UHGV-1992297_44	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-1992297_45	PHROG	phrog_19734	NA	unknown function
UHGV-1992297_45	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-1992297_45	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1992297_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1992297_46	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1992297_46	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1992297_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1992297_47	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1992297_47	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1992297_47	Structural annotation	TIGR01725	NA	NA
UHGV-1992297_48	PHROG	phrog_88	major tail protein	tail
UHGV-1992297_48	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-1992297_48	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1992297_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1992297_48	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1992297_51	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1992297_51	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-1992297_51	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-1992297_51	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1992297_51	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1992297_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1992297_51	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1992297_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1992297_52	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1992297_52	eggNOG-mapper	748727.CLJU_c03670	tail component	NA
UHGV-1992297_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1992297_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-1992297_52	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1992297_53	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1992297_53	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-1992297_53	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1992297_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1992297_53	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1992297_53	COG	COG4926	Phage-related protein	NA
UHGV-1992297_53	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1992297_55	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1992297_55	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-1992297_55	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-1992297_56	KOfam	K07273	acm; lysozyme	NA
UHGV-1992297_56	PHROG	phrog_291	endolysin	lysis
UHGV-1992297_56	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1992297_56	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1992297_56	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1992297_56	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1992297_56	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1992297_57	PHROG	phrog_1863	NA	unknown function
UHGV-1992297_57	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1992297_58	PHROG	phrog_15303	NA	unknown function
UHGV-1992297_60	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1992297_60	Pfam	PF09274	ParG	ParG
UHGV-1992297_60	Structural annotation	PF10723	NA	NA
UHGV-1992297_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1992297_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1992297_61	UniRef90	UniRef90_A0A386H238	Helix-turn-helix domain-containing protein	NA
UHGV-1992297_61	eggNOG-mapper	1226325.HMPREF1548_06481	Helix-turn-helix XRE-family like proteins	NA
UHGV-1992297_61	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1992297_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1992297_61	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1992297_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1992297_61	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1992297_65	PHROG	phrog_16490	NA	unknown function
UHGV-1992297_65	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1992297_66	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1992297_67	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA