UHGV-1993463

Genome information

vOTU vOTU-032086

Genome length 11,078 bps

CDS count 19

Completeness 83.89% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1993463
vOTU ID	vOTU-032086
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300028954\|Ga0169716_10188\|provirus_41_11118
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.31
Jumbo phage	No

Genome content
Genome length	11,078 bps
GC content	35.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	83.48%
Average CDS length	491.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1993463_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1993463_1	UniRef90	UniRef90_UPI00077D2CF3	NA	NA
UHGV-1993463_1	eggNOG-mapper	585203.SMSK564_1581	NA	NA
UHGV-1993463_2	UniRef90	UniRef90_F9HPW5	Conserved domain protein	NA
UHGV-1993463_2	eggNOG-mapper	585203.SMSK564_1582	NA	NA
UHGV-1993463_3	PHROG	phrog_10	major head protein	head and packaging
UHGV-1993463_3	UniRef90	UniRef90_A0A4V0EWD0	Capsid protein	NA
UHGV-1993463_3	eggNOG-mapper	585203.SMSK564_1583	Phage capsid family	NA
UHGV-1993463_3	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1993463_3	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1993463_3	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1993463_3	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1993463_4	eggNOG-mapper	585203.SMSK564_1585	NA	NA
UHGV-1993463_5	eggNOG-mapper	1008453.HMPREF9957_0713	NA	NA
UHGV-1993463_6	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1993463_6	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1993463_6	UniRef90	UniRef90_A0A0F2D744	AAA domain-containing protein	NA
UHGV-1993463_6	eggNOG-mapper	585203.SMSK564_1586	RNA helicase	NA
UHGV-1993463_6	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1993463_6	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1993463_6	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1993463_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1993463_7	PHROG	phrog_1163	NA	unknown function
UHGV-1993463_7	UniRef90	UniRef90_UPI0012DBEBA8	conserved phage C-terminal domain-containing protein	NA
UHGV-1993463_7	eggNOG-mapper	1008453.HMPREF9957_0715	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1993463_7	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1993463_7	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1993463_7	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1993463_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1993463_7	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG5529	NA	NA
UHGV-1993463_8	PHROG	phrog_10458	NA	unknown function
UHGV-1993463_8	UniRef90	UniRef90_A0A0U0KCF5	NA	NA
UHGV-1993463_8	eggNOG-mapper	1035187.HMPREF9959_1772	NA	NA
UHGV-1993463_8	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-1993463_9	PHROG	phrog_11572	NA	unknown function
UHGV-1993463_9	eggNOG-mapper	768726.HMPREF9178_1173	NA	NA
UHGV-1993463_10	PHROG	phrog_20097	NA	unknown function
UHGV-1993463_10	UniRef90	UniRef90_A0A4D5ZJJ9	Glycerate kinase	NA
UHGV-1993463_10	eggNOG-mapper	1008453.HMPREF9957_0717	DnaD domain protein	NA
UHGV-1993463_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1993463_12	UniRef90	UniRef90_A0A064C2J8	NA	NA
UHGV-1993463_12	eggNOG-mapper	1035187.HMPREF9959_1775	NA	NA
UHGV-1993463_13	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-1993463_13	UniRef90	UniRef90_A0A0F2D0L4	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1993463_13	eggNOG-mapper	1095727.HMPREF1117_0370	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1993463_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1993463_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1993463_13	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-1993463_14	UniRef90	UniRef90_A0A2N9ZY57	Transcriptional regulator	NA
UHGV-1993463_14	eggNOG-mapper	768726.HMPREF9178_1177	TRANSCRIPTIONal	NA
UHGV-1993463_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1993463_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1993463_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1993463_15	UniRef90	UniRef90_A0A4D5ZKH0	HTH cro/C1-type domain-containing protein	NA
UHGV-1993463_15	eggNOG-mapper	585202.SMSK321_1574	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1993463_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1993463_16	PHROG	phrog_22683	NA	unknown function
UHGV-1993463_16	UniRef90	UniRef90_A0A133RVS5	NA	NA
UHGV-1993463_16	eggNOG-mapper	1008453.HMPREF9957_0722	NA	NA
UHGV-1993463_16	AcrCatalog	cluster_3962	NA	NA
UHGV-1993463_16	Pfam	PF13783	NA	DUF4177
UHGV-1993463_16	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-1993463_17	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-1993463_17	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-1993463_17	UniRef90	UniRef90_UPI000BBD2ED6	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-1993463_17	eggNOG-mapper	1095737.HMPREF1110_1835	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-1993463_17	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1993463_17	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1993463_17	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-1993463_18	KOfam	K14059	int; integrase	NA
UHGV-1993463_18	PHROG	phrog_1	integrase	integration and excision
UHGV-1993463_18	UniRef90	UniRef90_A0A4D5ZKL0	Integrase	NA
UHGV-1993463_18	eggNOG-mapper	1008453.HMPREF9957_0726	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1993463_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1993463_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1993463_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1993463_18	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1993463_19	KOfam	K02049	ABC.SN.A; NitT/TauT family transport system ATP-binding protein	NA
UHGV-1993463_19	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-1993463_19	UniRef90	UniRef90_A0A062WPX2	ABC transporter ATP-binding protein	NA
UHGV-1993463_19	eggNOG-mapper	365659.smi_2047	ATPases associated with a variety of cellular activities	NA
UHGV-1993463_19	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-1993463_19	COG	COG1116	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	NA
UHGV-1993463_19	Structural annotation	PF00005, MF_00848, TIGR02211, COG1116	NA	NA