UHGV-1993488

Genome information

Genome length 27,896 bps

CDS count 43

Completeness 59.87% (medium-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-1993488
vOTU ID	vOTU-041353
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023504\|Ga0257038_100226\|provirus_2_27897
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.42
Jumbo phage	No

Genome content
Genome length	27,896 bps
GC content	38.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.46%
Average CDS length	596.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1993488_4	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1993488_4	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1993488_4	UniRef90	UniRef90_A0A1Q6KUL6	PAPS_reduct domain-containing protein	NA
UHGV-1993488_4	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1993488_4	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1993488_4	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1993488_4	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1993488_7	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1993488_7	PHROG	phrog_1	integrase	integration and excision
UHGV-1993488_7	UniRef90	UniRef90_UPI001C034698	tyrosine-type recombinase/integrase	NA
UHGV-1993488_7	eggNOG-mapper	45361.MCJ_004130	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1993488_7	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1993488_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1993488_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1993488_7	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1993488_8	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-1993488_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1993488_10	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-1993488_10	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-1993488_10	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1993488_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1993488_12	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1993488_12	UniRef90	UniRef90_A0A413SPG6	Phage portal protein	NA
UHGV-1993488_12	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-1993488_12	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1993488_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1993488_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1993488_12	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1993488_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1993488_13	PHROG	phrog_10250	NA	unknown function
UHGV-1993488_13	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-1993488_13	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1993488_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1993488_13	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1993488_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1993488_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-1993488_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1993488_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-1993488_14	UniRef90	UniRef90_UPI001C01A84E	phage portal protein	NA
UHGV-1993488_14	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1993488_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1993488_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1993488_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1993488_15	PHROG	phrog_1233	NA	unknown function
UHGV-1993488_15	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1993488_15	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-1993488_16	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1993488_16	UniRef90	UniRef90_UPI001C00E771	minor capsid protein	NA
UHGV-1993488_16	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1993488_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1993488_16	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1993488_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1993488_16	COG	COG2369	NA	NA
UHGV-1993488_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1993488_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1993488_17	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-1993488_17	eggNOG-mapper	411468.CLOSCI_00287	Phage minor structural protein GP20	NA
UHGV-1993488_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1993488_17	Structural annotation	PF06810	NA	NA
UHGV-1993488_18	PHROG	phrog_247	major head protein	head and packaging
UHGV-1993488_18	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-1993488_18	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-1993488_18	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1993488_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1993488_19	UniRef90	UniRef90_UPI001C012CC6	phage head-tail connector protein	NA
UHGV-1993488_19	eggNOG-mapper	445335.CBN_1380	Phage gp6-like head-tail connector protein	NA
UHGV-1993488_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1993488_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1993488_20	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1993488_20	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-1993488_20	eggNOG-mapper	1029718.SFBM_0124	NA	NA
UHGV-1993488_20	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1993488_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1993488_21	UniRef90	UniRef90_UPI000BB864CF	HK97 gp10 family phage protein	NA
UHGV-1993488_21	eggNOG-mapper	642492.Clole_2753	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1993488_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1993488_21	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-1993488_22	PHROG	phrog_525	NA	unknown function
UHGV-1993488_22	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-1993488_22	eggNOG-mapper	357809.Cphy_2960	NA	NA
UHGV-1993488_22	Pfam	PF20765	NA	DUF6838
UHGV-1993488_22	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1993488_23	PHROG	phrog_966	NA	unknown function
UHGV-1993488_24	PHROG	phrog_279	tail sheath	tail
UHGV-1993488_24	UniRef90	UniRef90_A0A354CP34	Phage tail protein	NA
UHGV-1993488_24	eggNOG-mapper	1235793.C809_01940	Phage tail sheath protein beta-sandwich domain	NA
UHGV-1993488_24	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1993488_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1993488_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1993488_24	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1993488_25	PHROG	phrog_365	tail protein	tail
UHGV-1993488_25	UniRef90	UniRef90_UPI001C02900F	phage tail tube protein	NA
UHGV-1993488_25	eggNOG-mapper	742740.HMPREF9474_02346	Phage tail tube protein	NA
UHGV-1993488_25	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1993488_25	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1993488_26	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1993488_26	UniRef90	UniRef90_A9KPN9	XkdN-like protein	NA
UHGV-1993488_26	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1993488_26	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1993488_26	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1993488_27	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1993488_27	UniRef90	UniRef90_A0A173SDK0	Phage-related minor tail protein	NA
UHGV-1993488_27	eggNOG-mapper	608534.GCWU000341_02282	tape measure	NA
UHGV-1993488_27	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1993488_27	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1993488_27	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1993488_27	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1993488_28	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1993488_28	PHROG	phrog_380	endolysin	lysis
UHGV-1993488_28	UniRef90	UniRef90_A0A1Q6K9H2	Peptidoglycan-binding protein LysM	NA
UHGV-1993488_28	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-1993488_28	Pfam	PF01476	LysM domain	LysM
UHGV-1993488_28	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1993488_28	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-1993488_29	PHROG	phrog_400	tail protein	tail
UHGV-1993488_29	UniRef90	UniRef90_A0A1Q6K979	Hydrolase	NA
UHGV-1993488_29	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1993488_29	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1993488_29	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1993488_30	PHROG	phrog_579	NA	unknown function
UHGV-1993488_30	UniRef90	UniRef90_UPI001F4E5AB6	NA	NA
UHGV-1993488_30	eggNOG-mapper	1347368.HG964405_gene5701	NA	NA
UHGV-1993488_30	Pfam	PF10844	NA	DUF2577
UHGV-1993488_30	Structural annotation	PF10844	NA	NA
UHGV-1993488_31	PHROG	phrog_120	baseplate protein	tail
UHGV-1993488_31	UniRef90	UniRef90_A0A415TAC7	NA	NA
UHGV-1993488_31	eggNOG-mapper	397288.C806_00119	NA	NA
UHGV-1993488_31	Pfam	PF10934	NA	DUF2634
UHGV-1993488_31	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1993488_31	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-1993488_32	PHROG	phrog_1608	tail protein	tail
UHGV-1993488_32	UniRef90	UniRef90_A0A354CNF6	Phage tail protein	NA
UHGV-1993488_32	eggNOG-mapper	1195236.CTER_3989	Baseplate J-like protein	NA
UHGV-1993488_32	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1993488_32	COG	COG3299	NA	NA
UHGV-1993488_32	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1993488_33	PHROG	phrog_521	tail protein	tail
UHGV-1993488_33	UniRef90	UniRef90_UPI0010303FE2	NA	NA
UHGV-1993488_33	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-1993488_33	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1993488_33	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-1993488_33	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1993488_34	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-1993488_36	PHROG	phrog_4105	NA	unknown function
UHGV-1993488_36	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1993488_37	PHROG	phrog_1129	holin	lysis
UHGV-1993488_37	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-1993488_37	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1993488_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1993488_37	Structural annotation	PF06946	NA	NA
UHGV-1993488_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1993488_38	PHROG	phrog_435	endolysin	lysis
UHGV-1993488_38	UniRef90	UniRef90_UPI000E552B56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1993488_38	eggNOG-mapper	1235800.C819_02218	PFAM Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1993488_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1993488_38	Pfam	PF19087	NA	DUF5776
UHGV-1993488_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1993488_38	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1993488_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1993488_39	UniRef90	UniRef90_A0A6L6L8J3	XRE family transcriptional regulator	NA
UHGV-1993488_39	eggNOG-mapper	1128111.HMPREF0870_00982	Protein conserved in bacteria	NA
UHGV-1993488_39	COG	COG1426	NA	NA
UHGV-1993488_39	Structural annotation	PF13560, MF_00535, NF041951, COG1513	NA	NA
UHGV-1993488_40	PHROG	phrog_87	metallo-protease	other
UHGV-1993488_40	UniRef90	UniRef90_A0A6L6L8D0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1993488_40	eggNOG-mapper	997296.PB1_16109	NA	NA
UHGV-1993488_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1993488_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1993488_40	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-1993488_42	eggNOG-mapper	1123288.SOV_6c00720	NA	NA