UHGV-1994298

Genome information

Genome length 36,870 bps

CDS count 43

Completeness 85.92% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1994298
vOTU ID	vOTU-018989
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300028579\|Ga0308426_10276\|provirus_52554_89423
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.19
Jumbo phage	No

Genome content
Genome length	36,870 bps
GC content	49.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.64%
Average CDS length	804.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1994298_1	KOfam	K14059	int; integrase	NA
UHGV-1994298_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1994298_1	UniRef90	UniRef90_A0A3E2V558	Site-specific integrase	NA
UHGV-1994298_1	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-1994298_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1994298_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1994298_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1994298_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1994298_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1994298_2	PHROG	phrog_19856	NA	unknown function
UHGV-1994298_2	UniRef90	UniRef90_A0A4S2ABL5	Ftsk_gamma domain-containing protein	NA
UHGV-1994298_2	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-1994298_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1994298_2	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-1994298_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1994298_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-1994298_3	PHROG	phrog_87	metallo-protease	other
UHGV-1994298_3	UniRef90	UniRef90_A0A1I0JAG9	Peptidase_M78 domain-containing protein	NA
UHGV-1994298_3	eggNOG-mapper	411459.RUMOBE_00962	Zn peptidase	NA
UHGV-1994298_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1994298_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1994298_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1994298_4	UniRef90	UniRef90_A0A412Z0K3	XRE family transcriptional regulator	NA
UHGV-1994298_4	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-1994298_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1994298_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1994298_5	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-1994298_5	UniRef90	UniRef90_A0A412Z0M7	Transcriptional regulator	NA
UHGV-1994298_5	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-1994298_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1994298_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1994298_6	UniRef90	UniRef90_A8RPS8	HTH_17 domain-containing protein	NA
UHGV-1994298_6	eggNOG-mapper	411902.CLOBOL_02552	Helix-turn-helix domain	NA
UHGV-1994298_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1994298_6	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1994298_9	PHROG	phrog_34638	NA	unknown function
UHGV-1994298_9	Structural annotation	COG1965	NA	NA
UHGV-1994298_12	PHROG	phrog_18562	NA	unknown function
UHGV-1994298_12	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-1994298_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1994298_13	UniRef90	UniRef90_A0A844IWY0	NA	NA
UHGV-1994298_13	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-1994298_13	Pfam	PF10926	NA	DUF2800
UHGV-1994298_13	COG	COG2887	RecB family exonuclease	NA
UHGV-1994298_13	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1994298_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1994298_14	UniRef90	UniRef90_UPI000A941738	NA	NA
UHGV-1994298_14	eggNOG-mapper	1117108.PAALTS15_09990	NA	NA
UHGV-1994298_14	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1994298_14	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-1994298_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1994298_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1994298_15	UniRef90	UniRef90_A0A174ECD4	DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains	NA
UHGV-1994298_15	eggNOG-mapper	86416.Clopa_0561	DNA polymerase	NA
UHGV-1994298_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1994298_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1994298_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1994298_16	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1994298_16	UniRef90	UniRef90_A0A1C7GCH9	Virulence-associated protein E	NA
UHGV-1994298_16	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-1994298_16	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1994298_16	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1994298_16	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1994298_17	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1994298_17	UniRef90	UniRef90_R0AHX3	VRR-NUC domain-containing protein	NA
UHGV-1994298_17	eggNOG-mapper	1410624.JNKK01000017_gene1961	VRR_NUC	NA
UHGV-1994298_17	Structural annotation	PF18741	NA	NA
UHGV-1994298_18	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1994298_18	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1994298_18	UniRef90	UniRef90_R0A7E9	Helicase ATP-binding domain-containing protein	NA
UHGV-1994298_18	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-1994298_18	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1994298_18	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1994298_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1994298_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1994298_18	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1994298_19	PHROG	phrog_15077	NA	unknown function
UHGV-1994298_19	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-1994298_19	Structural annotation	NF038070	NA	NA
UHGV-1994298_20	UniRef90	UniRef90_R0A7E5	NA	NA
UHGV-1994298_20	Pfam	PF04448	NA	DUF551
UHGV-1994298_21	eggNOG-mapper	411902.CLOBOL_05675	NA	NA
UHGV-1994298_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1994298_23	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-1994298_23	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-1994298_23	Structural annotation	PF02996	NA	NA
UHGV-1994298_24	AcrCatalog	cluster_202901	NA	NA
UHGV-1994298_25	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1994298_25	UniRef90	UniRef90_R0CLX0	Phage terminase small subunit	NA
UHGV-1994298_25	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-1994298_25	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1994298_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1994298_25	COG	COG5484	NA	NA
UHGV-1994298_25	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1994298_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1994298_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1994298_26	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-1994298_26	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-1994298_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1994298_26	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1994298_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-1994298_27	UniRef90	UniRef90_UPI0011062C56	phage portal protein	NA
UHGV-1994298_27	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-1994298_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1994298_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1994298_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1994298_28	UniRef90	UniRef90_A0A3E2UZQ7	Minor capsid protein	NA
UHGV-1994298_28	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-1994298_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1994298_28	COG	COG2369	NA	NA
UHGV-1994298_28	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1994298_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1994298_30	UniRef90	UniRef90_C0CSR8	Phage minor structural protein GP20	NA
UHGV-1994298_30	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-1994298_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1994298_30	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1994298_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-1994298_31	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-1994298_31	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-1994298_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1994298_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1994298_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1994298_31	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1994298_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1994298_32	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-1994298_33	PHROG	phrog_3366	NA	unknown function
UHGV-1994298_33	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-1994298_33	Pfam	PF20536	NA	DUF6751
UHGV-1994298_33	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1994298_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1994298_34	UniRef90	UniRef90_UPI000E44F835	minor capsid protein	NA
UHGV-1994298_34	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-1994298_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1994298_34	Structural annotation	PF11114	NA	NA
UHGV-1994298_35	PHROG	phrog_3266	tail completion	connector
UHGV-1994298_35	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-1994298_35	Structural annotation	PF20765	NA	NA
UHGV-1994298_36	PHROG	phrog_3099	NA	unknown function
UHGV-1994298_36	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-1994298_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1994298_37	PHROG	phrog_11299	NA	unknown function
UHGV-1994298_37	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-1994298_37	Structural annotation	PF10666	NA	NA
UHGV-1994298_38	PHROG	phrog_706	NA	unknown function
UHGV-1994298_38	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-1994298_38	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-1994298_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1994298_38	Structural annotation	PF06854	NA	NA
UHGV-1994298_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1994298_39	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-1994298_39	COG	COG5283	Phage-related tail protein	NA
UHGV-1994298_40	PHROG	phrog_1194	NA	unknown function
UHGV-1994298_40	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-1994298_40	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1994298_41	PHROG	phrog_13879	NA	unknown function
UHGV-1994298_41	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-1994298_41	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-1994298_42	PHROG	phrog_18725	NA	unknown function
UHGV-1994298_42	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-1994298_43	eggNOG-mapper	411902.CLOBOL_00122	NA	NA