UHGV-1994304

Genome information

Genome length 39,227 bps

CDS count 56

Completeness 99.32% (high-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-1994304
vOTU ID	vOTU-007741
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029066\|Ga0169219_10021\|provirus_24994_64220
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.98
Jumbo phage	No

Genome content
Genome length	39,227 bps
GC content	33.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	85.88%
Average CDS length	603.70 bps
tRNA count	3
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1994304_2	KOfam	K01772	hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]	NA
UHGV-1994304_2	UniRef90	UniRef90_Q833G5	Coproporphyrin III ferrochelatase	NA
UHGV-1994304_2	eggNOG-mapper	226185.EF_1989	Catalyzes the ferrous insertion into protoporphyrin IX	NA
UHGV-1994304_2	Pfam	PF00762	Ferrochelatase	Ferrochelatase
UHGV-1994304_2	NCBIFam	TIGR00109.1	ferrochelatase	NA
UHGV-1994304_2	COG	COG0276	Protoheme ferro-lyase (ferrochelatase)	NA
UHGV-1994304_2	HAMAP	MF_00323	Coproporphyrin III ferrochelatase [cpfC]	NA
UHGV-1994304_3	eggNOG-mapper	226185.EF_1990	NA	NA
UHGV-1994304_4	KOfam	K03704	cspA; cold shock protein	NA
UHGV-1994304_4	PHROG	phrog_729	cold shock protein	other
UHGV-1994304_4	UniRef90	UniRef90_A0A2Z6BK42	Cold-shock protein	NA
UHGV-1994304_4	eggNOG-mapper	226185.EF_1991	Cold shock	NA
UHGV-1994304_4	PADLOC	retron_type_V_csd_cluster85_1	NA	Retron
UHGV-1994304_4	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-1994304_4	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-1994304_4	Structural annotation	PF00313, NF007062, COG1278	NA	NA
UHGV-1994304_5	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1994304_5	PHROG	phrog_291	endolysin	lysis
UHGV-1994304_5	UniRef90	UniRef90_E6F1Y4	Glycosyl hydrolase family 25	NA
UHGV-1994304_5	eggNOG-mapper	226185.EF_1992	and GP 10880731	NA
UHGV-1994304_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1994304_5	Pfam	PF01476	LysM domain	LysM
UHGV-1994304_5	COG	COG1388	LysM repeat	NA
UHGV-1994304_5	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-1994304_6	PHROG	phrog_10091	holin	lysis
UHGV-1994304_6	UniRef90	UniRef90_A0A1J6XP00	Phage holin	NA
UHGV-1994304_6	eggNOG-mapper	226185.EF_1993	Bacteriophage holin	NA
UHGV-1994304_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1994304_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1994304_6	COG	COG5546	NA	NA
UHGV-1994304_7	PHROG	phrog_5620	NA	unknown function
UHGV-1994304_8	PHROG	phrog_134	NA	unknown function
UHGV-1994304_8	UniRef90	UniRef90_A0A2S7M0P2	XkdX family protein	NA
UHGV-1994304_8	eggNOG-mapper	396513.SCA_0513	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1994304_8	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1994304_8	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1994304_9	PHROG	phrog_1536	NA	unknown function
UHGV-1994304_9	eggNOG-mapper	1158602.I590_02582	NA	NA
UHGV-1994304_10	PHROG	phrog_7389	tail fiber protein	tail
UHGV-1994304_10	eggNOG-mapper	1458851.X2KQE1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1994304_12	PHROG	phrog_6907	NA	unknown function
UHGV-1994304_12	UniRef90	UniRef90_A0A2T5D5H6	Collagen-like protein	NA
UHGV-1994304_12	eggNOG-mapper	1158607.UAU_01046	NA	NA
UHGV-1994304_13	PHROG	phrog_9625	NA	unknown function
UHGV-1994304_13	eggNOG-mapper	1158607.UAU_01045	NA	NA
UHGV-1994304_14	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-1994304_14	UniRef90	UniRef90_UPI000F811C55	phage baseplate upper protein	NA
UHGV-1994304_14	eggNOG-mapper	1201292.DR75_1628	NA	NA
UHGV-1994304_14	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1994304_14	Structural annotation	PF10651, NF040788	NA	NA
UHGV-1994304_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1994304_15	UniRef90	UniRef90_A0A0M2AC52	Phage minor structural protein	NA
UHGV-1994304_15	eggNOG-mapper	226185.EF_2001	Prophage endopeptidase tail	NA
UHGV-1994304_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1994304_15	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1994304_15	Pfam	PF05257	CHAP domain	CHAP
UHGV-1994304_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1994304_15	COG	COG4926	Phage-related protein	NA
UHGV-1994304_15	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-1994304_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1994304_16	UniRef90	UniRef90_Q833F7	Tail protein, putative	NA
UHGV-1994304_16	eggNOG-mapper	226185.EF_2002	phage tail	NA
UHGV-1994304_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-1994304_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1994304_17	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-1994304_17	UniRef90	UniRef90_Q833F6	Tape measure protein, putative	NA
UHGV-1994304_17	eggNOG-mapper	226185.EF_2003	Phage tail tape measure protein, TP901 family	NA
UHGV-1994304_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1994304_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1994304_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1994304_17	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1994304_18	PHROG	phrog_187	head-tail adaptor	connector
UHGV-1994304_18	eggNOG-mapper	226185.EF_2004	NA	NA
UHGV-1994304_19	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1994304_19	PHROG	phrog_88	major tail protein	tail
UHGV-1994304_19	UniRef90	UniRef90_A0A1J6YRG1	Ig-like domain-containing protein	NA
UHGV-1994304_19	eggNOG-mapper	226185.EF_2005	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-1994304_19	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1994304_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1994304_19	COG	COG5492	NA	NA
UHGV-1994304_20	PHROG	phrog_525	NA	unknown function
UHGV-1994304_20	eggNOG-mapper	226185.EF_2006	NA	NA
UHGV-1994304_20	Pfam	PF20765	NA	DUF6838
UHGV-1994304_20	Structural annotation	PF20765	NA	NA
UHGV-1994304_21	UniRef90	UniRef90_UPI0006672BAF	HK97 gp10 family phage protein	NA
UHGV-1994304_21	eggNOG-mapper	226185.EF_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1994304_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1994304_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1994304_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1994304_22	UniRef90	UniRef90_R3I753	50S ribosomal protein L23	NA
UHGV-1994304_22	eggNOG-mapper	226185.EF_2008	NA	NA
UHGV-1994304_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1994304_23	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1994304_23	eggNOG-mapper	1201292.DR75_1509	NA	NA
UHGV-1994304_24	PHROG	phrog_8832	NA	unknown function
UHGV-1994304_24	eggNOG-mapper	226185.EF_2010	NA	NA
UHGV-1994304_25	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1994304_25	UniRef90	UniRef90_UPI00065DF913	NA	NA
UHGV-1994304_25	eggNOG-mapper	226185.EF_2011	NA	NA
UHGV-1994304_25	Pfam	PF17236	NA	DUF5309
UHGV-1994304_25	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-1994304_26	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1994304_26	UniRef90	UniRef90_UPI000CF22661	NA	NA
UHGV-1994304_26	eggNOG-mapper	226185.EF_2012	NA	NA
UHGV-1994304_26	Pfam	PF14265	NA	DUF4355
UHGV-1994304_26	Structural annotation	PF14265	NA	NA
UHGV-1994304_27	PHROG	phrog_5859	NA	unknown function
UHGV-1994304_27	eggNOG-mapper	226185.EF_2013	NA	NA
UHGV-1994304_27	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-1994304_29	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1994304_29	UniRef90	UniRef90_A0A8F3AAG2	Gln_amidase domain-containing protein	NA
UHGV-1994304_29	eggNOG-mapper	226185.EF_2015	cell adhesion	NA
UHGV-1994304_29	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-1994304_29	COG	COG2369	NA	NA
UHGV-1994304_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-1994304_30	UniRef90	UniRef90_Q833E4	Portal protein	NA
UHGV-1994304_30	eggNOG-mapper	226185.EF_2016	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1994304_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1994304_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1994304_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1994304_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1994304_31	UniRef90	UniRef90_E0HA02	Phage terminase, large subunit, PBSX family	NA
UHGV-1994304_31	eggNOG-mapper	1201292.DR75_1517	Terminase RNAseH like domain	NA
UHGV-1994304_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1994304_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1994304_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1994304_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1994304_31	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1994304_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1994304_32	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1994304_32	UniRef90	UniRef90_D2J000	Terminase	NA
UHGV-1994304_32	eggNOG-mapper	673832.D2IYW0_9CAUD	DNA packaging	NA
UHGV-1994304_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1994304_32	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1994304_32	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-1994304_33	PHROG	phrog_19788	NA	unknown function
UHGV-1994304_33	UniRef90	UniRef90_UPI001CF4FF94	NA	NA
UHGV-1994304_33	Pfam	PF18928	NA	DUF5677
UHGV-1994304_34	eggNOG-mapper	1234679.BN424_1485	NA	NA
UHGV-1994304_35	PHROG	phrog_11507	NA	unknown function
UHGV-1994304_35	eggNOG-mapper	1194526.A284_09375	NA	NA
UHGV-1994304_37	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1994304_37	UniRef90	UniRef90_D2IYV6	Transcriptional regulator ArpU family	NA
UHGV-1994304_37	eggNOG-mapper	226185.EF_2024	ArpU family	NA
UHGV-1994304_37	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1994304_37	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-1994304_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1994304_38	PHROG	phrog_24390	NA	unknown function
UHGV-1994304_38	UniRef90	UniRef90_A0A125W4C7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1994304_38	eggNOG-mapper	226185.EF_2128	Endodeoxyribonuclease RusA	NA
UHGV-1994304_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1994304_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1994304_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1994304_39	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-1994304_39	UniRef90	UniRef90_R3H4X5	MazG domain-containing protein	NA
UHGV-1994304_39	eggNOG-mapper	673832.D2IYU1_9CAUD	sequence-specific DNA binding	NA
UHGV-1994304_39	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1994304_40	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1994304_40	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-1994304_40	eggNOG-mapper	1140001.I571_01721	NA	NA
UHGV-1994304_40	Structural annotation	PF17399	NA	NA
UHGV-1994304_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1994304_41	UniRef90	UniRef90_UPI000FFF549C	helix-turn-helix domain-containing protein	NA
UHGV-1994304_41	eggNOG-mapper	226185.EF_2027	Helix-turn-helix domain	NA
UHGV-1994304_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1994304_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1994304_41	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA
UHGV-1994304_43	PHROG	phrog_398	NA	unknown function
UHGV-1994304_43	UniRef90	UniRef90_UPI000CF11369	putative HNHc nuclease	NA
UHGV-1994304_43	eggNOG-mapper	1201292.DR75_1532	Putative HNHc nuclease	NA
UHGV-1994304_43	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1994304_43	Structural annotation	PF16784	NA	NA
UHGV-1994304_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1994304_44	UniRef90	UniRef90_A0A7H0FKY5	ERF family protein	NA
UHGV-1994304_44	eggNOG-mapper	226185.EF_2031	ERF superfamily	NA
UHGV-1994304_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-1994304_45	PHROG	phrog_38186	NA	unknown function
UHGV-1994304_46	PHROG	phrog_21427	NA	unknown function
UHGV-1994304_47	PHROG	phrog_4690	NA	unknown function
UHGV-1994304_47	eggNOG-mapper	565664.EFXG_02681	NA	NA
UHGV-1994304_48	PHROG	phrog_1270	NA	unknown function
UHGV-1994304_49	PHROG	phrog_1422	NA	unknown function
UHGV-1994304_49	UniRef90	UniRef90_S4CJ67	NA	NA
UHGV-1994304_49	eggNOG-mapper	226185.EF_2036	NA	NA
UHGV-1994304_49	Pfam	PF07411	NA	DUF1508
UHGV-1994304_49	COG	COG3422	NA	NA
UHGV-1994304_49	Structural annotation	PF07411, NF041908, COG3422	NA	NA
UHGV-1994304_50	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1994304_50	UniRef90	UniRef90_R3JGN7	Rha family phage regulatory protein	NA
UHGV-1994304_50	eggNOG-mapper	226185.EF_2037	ORF6C domain	NA
UHGV-1994304_50	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1994304_50	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1994304_50	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1994304_50	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1994304_50	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1994304_51	PHROG	phrog_14980	NA	unknown function
UHGV-1994304_51	eggNOG-mapper	574376.BAMA_02040	NA	NA
UHGV-1994304_52	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1994304_52	UniRef90	UniRef90_A0A7Z1Y8L0	XRE family transcriptional regulator	NA
UHGV-1994304_52	eggNOG-mapper	226185.EF_2039	NA	NA
UHGV-1994304_52	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-1994304_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1994304_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1994304_53	UniRef90	UniRef90_A0A2T5D531	Helix-turn-helix transcriptional regulator	NA
UHGV-1994304_53	eggNOG-mapper	226185.EF_2040	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1994304_53	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1994304_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1994304_53	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1994304_54	PHROG	phrog_1516	NA	unknown function
UHGV-1994304_54	UniRef90	UniRef90_E6ICU4	Putative toxin-antitoxin system, toxin component	NA
UHGV-1994304_54	eggNOG-mapper	226185.EF_2041	IrrE N-terminal-like domain	NA
UHGV-1994304_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1994304_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1994304_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1994304_55	PHROG	phrog_888	NA	unknown function
UHGV-1994304_55	UniRef90	UniRef90_A0A828QL97	SHOCT domain-containing protein	NA
UHGV-1994304_55	eggNOG-mapper	226185.EF_2042	Short C-terminal domain	NA
UHGV-1994304_55	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1994304_56	KOfam	K14059	int; integrase	NA
UHGV-1994304_56	PHROG	phrog_1	integrase	integration and excision
UHGV-1994304_56	UniRef90	UniRef90_R3KYW4	Phage integrase	NA
UHGV-1994304_56	eggNOG-mapper	226185.EF_2043	Belongs to the 'phage' integrase family	NA
UHGV-1994304_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1994304_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1994304_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1994304_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA