UHGV-1995979

Genome information

Genome length 31,236 bps

CDS count 58

Completeness 86.33% (medium-quality)

geNomad score 0.9593

Prediction confidence Confident

Genome information
Genome ID	UHGV-1995979
vOTU ID	vOTU-022673
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300028960\|Ga0169754_100353
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9593
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.1
Jumbo phage	No

Genome content
Genome length	31,236 bps
GC content	33.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.93%
Average CDS length	510.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1995979_1	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-1995979_2	PHROG	phrog_13289	tail protein	tail
UHGV-1995979_2	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-1995979_2	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1995979_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1995979_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1995979_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1995979_2	COG	COG4926	Phage-related protein	NA
UHGV-1995979_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1995979_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1995979_3	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-1995979_3	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-1995979_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1995979_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1995979_4	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1995979_4	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-1995979_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1995979_5	PHROG	phrog_23464	NA	unknown function
UHGV-1995979_5	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-1995979_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1995979_7	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-1995979_8	PHROG	phrog_88	major tail protein	tail
UHGV-1995979_8	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-1995979_8	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1995979_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1995979_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1995979_9	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-1995979_9	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-1995979_9	Structural annotation	TIGR01725	NA	NA
UHGV-1995979_10	PHROG	phrog_78	tail terminator	connector
UHGV-1995979_10	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-1995979_10	Structural annotation	PF05657	NA	NA
UHGV-1995979_11	PHROG	phrog_19734	NA	unknown function
UHGV-1995979_11	UniRef90	UniRef90_A0A3E3ACV2	Head-tail adaptor protein	NA
UHGV-1995979_11	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-1995979_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1995979_12	PHROG	phrog_2550	NA	unknown function
UHGV-1995979_12	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-1995979_12	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-1995979_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1995979_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1995979_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1995979_13	UniRef90	UniRef90_A0A3E3ACQ3	Phage major capsid protein	NA
UHGV-1995979_13	eggNOG-mapper	1232446.BAIE02000002_gene826	phage major capsid protein, HK97 family	NA
UHGV-1995979_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1995979_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1995979_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1995979_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1995979_14	KOfam	K06904	NA	NA
UHGV-1995979_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1995979_14	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-1995979_14	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-1995979_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1995979_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1995979_14	COG	COG3740	Phage head maturation protease	NA
UHGV-1995979_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1995979_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-1995979_15	UniRef90	UniRef90_A0A3E3AEZ3	Phage portal protein	NA
UHGV-1995979_15	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-1995979_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1995979_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1995979_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1995979_15	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1995979_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1995979_16	UniRef90	UniRef90_A0A3E3ADF9	Terminase large subunit	NA
UHGV-1995979_16	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-1995979_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1995979_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1995979_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1995979_16	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1995979_17	PHROG	phrog_10517	terminase large subunit	head and packaging
UHGV-1995979_17	UniRef90	UniRef90_A0A3A8QRA2	Terminase large subunit (Fragment)	NA
UHGV-1995979_17	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-1995979_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1995979_18	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1995979_18	UniRef90	UniRef90_A0A3E3ADK1	Terminase	NA
UHGV-1995979_18	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-1995979_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1995979_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1995979_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1995979_20	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-1995979_20	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-1995979_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1995979_21	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-1995979_23	PHROG	phrog_1828	NA	unknown function
UHGV-1995979_23	eggNOG-mapper	1450694.BTS2_0549	NA	NA
UHGV-1995979_26	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1995979_26	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1995979_26	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-1995979_26	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-1995979_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1995979_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-1995979_26	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1995979_27	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1995979_27	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-1995979_27	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1995979_27	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-1995979_28	PHROG	phrog_421	NA	unknown function
UHGV-1995979_28	UniRef90	UniRef90_UPI001D08F4DA	NA	NA
UHGV-1995979_28	eggNOG-mapper	401473.BDP_0936	NA	NA
UHGV-1995979_28	Pfam	PF10979	NA	DUF2786
UHGV-1995979_29	PHROG	phrog_625	NA	unknown function
UHGV-1995979_29	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-1995979_29	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-1995979_29	Structural annotation	PF12961, NF002008, COG2028	NA	NA
UHGV-1995979_32	UniRef90	UniRef90_A0A7U9CJ41	Phosphagen kinase N-terminal domain-containing protein	NA
UHGV-1995979_33	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1995979_33	UniRef90	UniRef90_A0A3E3EG87	SAM-dependent methyltransferase	NA
UHGV-1995979_33	eggNOG-mapper	1232446.BAIE02000011_gene1614	methyltransferase	NA
UHGV-1995979_33	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1995979_33	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1995979_33	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1995979_35	PHROG	phrog_7711	NA	unknown function
UHGV-1995979_35	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-1995979_35	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-1995979_37	PHROG	phrog_5051	NA	unknown function
UHGV-1995979_39	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1995979_39	PHROG	phrog_216	integrase	integration and excision
UHGV-1995979_39	UniRef90	UniRef90_A0A7U9CL76	Tyr recombinase domain-containing protein	NA
UHGV-1995979_39	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-1995979_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1995979_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1995979_39	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1995979_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1995979_44	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-1995979_44	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-1995979_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1995979_44	Structural annotation	PF13392, PF07453	NA	NA
UHGV-1995979_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1995979_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1995979_46	UniRef90	UniRef90_UPI000E4FA7A6	site-specific DNA-methyltransferase	NA
UHGV-1995979_46	eggNOG-mapper	1314.HKU360_01238	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-1995979_46	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1995979_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1995979_46	COG	COG0863	DNA modification methylase	NA
UHGV-1995979_46	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1995979_49	UniRef90	UniRef90_A0A3E3ACS2	DNA-binding protein	NA
UHGV-1995979_51	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1995979_51	UniRef90	UniRef90_UPI001D08DCF8	ORF6C domain-containing protein	NA
UHGV-1995979_51	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-1995979_51	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1995979_51	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1995979_51	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1995979_51	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1995979_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1995979_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1995979_53	UniRef90	UniRef90_G9R0X9	HTH cro/C1-type domain-containing protein	NA
UHGV-1995979_53	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-1995979_53	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1995979_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1995979_53	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1995979_55	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1995979_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1995979_55	UniRef90	UniRef90_G9R0X7	HTH cro/C1-type domain-containing protein	NA
UHGV-1995979_55	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-1995979_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1995979_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1995979_56	PHROG	phrog_26910	NA	unknown function
UHGV-1995979_56	eggNOG-mapper	536232.CLM_1686	NA	NA
UHGV-1995979_57	KOfam	K14059	int; integrase	NA
UHGV-1995979_57	PHROG	phrog_1	integrase	integration and excision
UHGV-1995979_57	UniRef90	UniRef90_UPI000E46F6FE	site-specific integrase	NA
UHGV-1995979_57	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-1995979_57	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1995979_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1995979_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1995979_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1995979_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1995979_58	KOfam	K02986	RP-S4, rpsD; small subunit ribosomal protein S4	NA
UHGV-1995979_58	UniRef90	UniRef90_B1C1I4	30S ribosomal protein S4	NA
UHGV-1995979_58	eggNOG-mapper	1232446.BAIE02000002_gene790	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	NA
UHGV-1995979_58	Pfam	PF01479	S4 domain	S4
UHGV-1995979_58	NCBIFam	NF003717.0	30S ribosomal protein S4	NA
UHGV-1995979_58	COG	COG0522	Ribosomal protein S4 or related protein	NA