UHGV-1996639

Genome information

Genome length 20,921 bps

CDS count 35

Completeness 53.06% (medium-quality)

geNomad score 0.9676

Prediction confidence Confident

Genome information
Genome ID	UHGV-1996639
vOTU ID	vOTU-041366
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300028960\|Ga0169754_100319\|provirus_15975_36895
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9676
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.76
Jumbo phage	No

Genome content
Genome length	20,921 bps
GC content	38.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	87.84%
Average CDS length	526.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1996639_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1996639_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1996639_1	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-1996639_1	eggNOG-mapper	1235792.C808_03104	NA	NA
UHGV-1996639_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1996639_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1996639_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1996639_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1996639_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-1996639_2	PHROG	phrog_2695	NA	unknown function
UHGV-1996639_2	UniRef90	UniRef90_A0A3A6CSY7	SIR2_2 domain-containing protein	NA
UHGV-1996639_2	eggNOG-mapper	1408287.AXUR01000026_gene102	NAD+ binding	NA
UHGV-1996639_2	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-1996639_2	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-1996639_2	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-1996639_2	Structural annotation	PF13289	NA	NA
UHGV-1996639_3	PHROG	phrog_7115	NA	unknown function
UHGV-1996639_3	UniRef90	UniRef90_A0A412C4Y3	PH domain-containing protein	NA
UHGV-1996639_3	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-1996639_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1996639_4	UniRef90	UniRef90_UPI001C2CB056	tetratricopeptide repeat protein	NA
UHGV-1996639_4	eggNOG-mapper	1232430.CAVG010000061_gene603	NA	NA
UHGV-1996639_5	PHROG	phrog_87	metallo-protease	other
UHGV-1996639_5	UniRef90	UniRef90_A0A3A6G714	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1996639_5	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-1996639_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1996639_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1996639_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1996639_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1996639_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1996639_6	UniRef90	UniRef90_A0A3A6GF44	XRE family transcriptional regulator	NA
UHGV-1996639_6	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-1996639_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1996639_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1996639_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1996639_7	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-1996639_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1996639_9	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-1996639_9	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-1996639_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1996639_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1996639_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1996639_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1996639_10	PHROG	phrog_674	NA	unknown function
UHGV-1996639_10	UniRef90	UniRef90_UPI000462FA44	NA	NA
UHGV-1996639_10	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-1996639_10	Pfam	PF07083	NA	DUF1351
UHGV-1996639_10	Structural annotation	PF07083	NA	NA
UHGV-1996639_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1996639_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1996639_11	UniRef90	UniRef90_A0A2N5PKF9	Recombinase	NA
UHGV-1996639_11	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-1996639_11	Pfam	PF03837	RecT family	RecT
UHGV-1996639_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1996639_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1996639_11	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1996639_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1996639_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1996639_12	UniRef90	UniRef90_A0A2N5PKE3	Single-stranded DNA-binding protein	NA
UHGV-1996639_12	eggNOG-mapper	626523.GCWU000342_01558	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1996639_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1996639_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1996639_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1996639_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1996639_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1996639_13	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1996639_13	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-1996639_13	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-1996639_14	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1996639_14	UniRef90	UniRef90_A0A2N5PKG2	Phage_rep_org_N domain-containing protein	NA
UHGV-1996639_14	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1996639_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1996639_14	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1996639_14	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1996639_15	PHROG	phrog_25488	NA	unknown function
UHGV-1996639_15	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-1996639_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1996639_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1996639_18	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1996639_18	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-1996639_18	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1996639_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1996639_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1996639_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1996639_20	PHROG	phrog_10714	NA	unknown function
UHGV-1996639_20	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-1996639_21	Structural annotation	PF06442, MF_01194, NF000331, COG1862	NA	NA
UHGV-1996639_24	Structural annotation	PF02895	NA	NA
UHGV-1996639_25	PHROG	phrog_15198	NA	unknown function
UHGV-1996639_25	UniRef90	UniRef90_A0A8B3BTL4	NA	NA
UHGV-1996639_25	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-1996639_25	Pfam	PF04448	NA	DUF551
UHGV-1996639_27	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-1996639_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1996639_29	UniRef90	UniRef90_A7B3S5	Sigma70_r4 domain-containing protein	NA
UHGV-1996639_29	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-1996639_29	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1996639_29	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-1996639_30	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1996639_30	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1996639_30	UniRef90	UniRef90_A0A396PU56	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-1996639_30	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1996639_30	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1996639_30	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1996639_30	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1996639_31	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1996639_31	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1996639_31	UniRef90	UniRef90_A0A1Y4U2U3	HicB family protein	NA
UHGV-1996639_31	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-1996639_31	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1996639_31	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1996639_31	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1996639_33	KOfam	K14059	int; integrase	NA
UHGV-1996639_33	PHROG	phrog_1	integrase	integration and excision
UHGV-1996639_33	UniRef90	UniRef90_A0A174BZU7	Integrase	NA
UHGV-1996639_33	eggNOG-mapper	476272.RUMHYD_01074	NA	NA
UHGV-1996639_33	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-1996639_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1996639_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1996639_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1996639_33	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1996639_34	PHROG	phrog_16129	excisionase	integration and excision
UHGV-1996639_34	UniRef90	UniRef90_A0A372UFR8	Excisionase	NA
UHGV-1996639_34	eggNOG-mapper	476272.RUMHYD_01073	Excisionase from transposon Tn916	NA
UHGV-1996639_34	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1996639_34	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-1996639_35	KOfam	K07467	nicK; putative DNA relaxase	NA
UHGV-1996639_35	PHROG	phrog_453	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1996639_35	UniRef90	UniRef90_R9IRQ7	Rol_Rep_N domain-containing protein	NA
UHGV-1996639_35	eggNOG-mapper	476272.RUMHYD_01072	NA	NA
UHGV-1996639_35	Pfam	PF18106	Rolling Circle replication initiation protein N-terminal domain	Rol_Rep_N
UHGV-1996639_35	Pfam	PF02486	Replication initiation factor	Rep_trans
UHGV-1996639_35	COG	COG2946	DNA relaxase NicK	NA