UHGV-1996649

Genome information

Genome length 33,919 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9481

Prediction confidence Confident

Genome information
Genome ID	UHGV-1996649
vOTU ID	vOTU-014314
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023494\|Ga0257057_100004\|provirus_416119_450037
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9481
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.4
Jumbo phage	No

Genome content
Genome length	33,919 bps
GC content	53.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.51%
Average CDS length	677.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1996649_1	KOfam	K14059	int; integrase	NA
UHGV-1996649_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1996649_1	UniRef90	UniRef90_A0A352SHK7	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-1996649_1	eggNOG-mapper	349741.Amuc_1659	Belongs to the 'phage' integrase family	NA
UHGV-1996649_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1996649_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1996649_1	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-1996649_3	Structural annotation	PF20505, MF_00194, NF001460, COG2974	NA	NA
UHGV-1996649_4	KOfam	K07126	NA	NA
UHGV-1996649_4	PHROG	phrog_8741	NA	unknown function
UHGV-1996649_4	UniRef90	UniRef90_A0A8F1F2P1	Sel1 repeat family protein	NA
UHGV-1996649_4	Pfam	PF08238	Sel1 repeat	Sel1
UHGV-1996649_4	COG	COG0790	TPR repeat	NA
UHGV-1996649_5	UniRef90	UniRef90_A0A410SEH8	YHYH domain-containing protein	NA
UHGV-1996649_5	eggNOG-mapper	1430440.MGMSRv2_1007	nuclease	NA
UHGV-1996649_5	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-1996649_5	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-1996649_6	PHROG	phrog_1762	NA	unknown function
UHGV-1996649_6	UniRef90	UniRef90_A0A8F1F204	NA	NA
UHGV-1996649_6	eggNOG-mapper	1202962.KB907154_gene658	NA	NA
UHGV-1996649_6	Pfam	PF11185	NA	DUF2971
UHGV-1996649_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1996649_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1996649_7	UniRef90	UniRef90_A0A4Q5ITN5	Peptidase_S24 domain-containing protein	NA
UHGV-1996649_7	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-1996649_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1996649_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1996649_7	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-1996649_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1996649_11	UniRef90	UniRef90_A0A410S908	ATP-binding protein	NA
UHGV-1996649_11	eggNOG-mapper	1410624.JNKK01000055_gene2198	AAA domain	NA
UHGV-1996649_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-1996649_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1996649_12	UniRef90	UniRef90_A0A410S925	NA	NA
UHGV-1996649_12	eggNOG-mapper	1403819.BATR01000122_gene4275	NA	NA
UHGV-1996649_12	Pfam	PF10926	NA	DUF2800
UHGV-1996649_14	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-1996649_14	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1996649_14	UniRef90	UniRef90_A0A7G6DSN7	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1996649_14	eggNOG-mapper	367299.JOEE01000001_gene1963	NA	NA
UHGV-1996649_14	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-1996649_14	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1996649_15	Structural annotation	PF17516	NA	NA
UHGV-1996649_17	Structural annotation	PF09465, MF_00667, TIGR00739, COG5475	NA	NA
UHGV-1996649_21	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1996649_21	UniRef90	UniRef90_A0A410S9A2	Class I SAM-dependent methyltransferase	NA
UHGV-1996649_21	eggNOG-mapper	1284352.AOIG01000022_gene3791	methyltransferase	NA
UHGV-1996649_21	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1996649_21	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1996649_21	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1996649_21	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1996649_22	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1996649_22	UniRef90	UniRef90_UPI0015841E4F	conserved phage C-terminal domain-containing protein	NA
UHGV-1996649_22	eggNOG-mapper	402626.Rpic_2326	ROK family	NA
UHGV-1996649_22	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-1996649_22	Structural annotation	PF10771, NF041413, COG0735	NA	NA
UHGV-1996649_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1996649_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1996649_23	UniRef90	UniRef90_A0A410S8Z8	DNA helicase	NA
UHGV-1996649_23	eggNOG-mapper	349741.Amuc_1377	DnaB-like helicase C terminal domain	NA
UHGV-1996649_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1996649_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1996649_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-1996649_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1996649_25	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-1996649_25	PHROG	phrog_16625	NA	unknown function
UHGV-1996649_25	UniRef90	UniRef90_A0A4Q5IVQ1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-1996649_25	eggNOG-mapper	563192.HMPREF0179_00384	Phage Mu protein F like protein	NA
UHGV-1996649_25	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1996649_25	COG	COG2369	NA	NA
UHGV-1996649_27	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-1996649_27	UniRef90	UniRef90_UPI0009AEAD69	ubiquitin carboxyl-hydrolase	NA
UHGV-1996649_27	eggNOG-mapper	521000.PROVRETT_06006	NA	NA
UHGV-1996649_27	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-1996649_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1996649_28	UniRef90	UniRef90_A0A1C7PDG0	p-loop containing nucleoside triphosphate hydrolase	NA
UHGV-1996649_28	eggNOG-mapper	411459.RUMOBE_01049	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-1996649_28	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1996649_28	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-1996649_29	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-1996649_31	Structural annotation	PF01344	NA	NA
UHGV-1996649_33	PHROG	phrog_315	endolysin	lysis
UHGV-1996649_33	UniRef90	UniRef90_A0A410SED1	PG_binding_3 domain-containing protein	NA
UHGV-1996649_33	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-1996649_33	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-1996649_33	COG	COG3926	Lysozyme family protein	NA
UHGV-1996649_33	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-1996649_34	PHROG	phrog_113	portal protein	head and packaging
UHGV-1996649_34	UniRef90	UniRef90_A0A4Q5IVR1	NA	NA
UHGV-1996649_34	eggNOG-mapper	794903.OPIT5_08305	NA	NA
UHGV-1996649_34	Pfam	PF06074	NA	DUF935
UHGV-1996649_34	COG	COG4383	NA	NA
UHGV-1996649_37	KOfam	K06079	cutF, nlpE; copper homeostasis protein (lipoprotein)	NA
UHGV-1996649_37	UniRef90	UniRef90_A0A641W1J7	Copper resistance protein NlpE	NA
UHGV-1996649_37	eggNOG-mapper	349741.Amuc_1432	regulation of cell-substrate adhesion	NA
UHGV-1996649_37	Pfam	PF04170	NlpE N-terminal domain	NlpE
UHGV-1996649_37	COG	COG3015	NA	NA
UHGV-1996649_38	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-1996649_38	UniRef90	UniRef90_UPI001C023827	phage protease	NA
UHGV-1996649_38	eggNOG-mapper	794903.OPIT5_08310	P22 coat protein - gene protein 5	NA
UHGV-1996649_38	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-1996649_39	eggNOG-mapper	521674.Plim_2126	NA	NA
UHGV-1996649_39	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1996649_39	Structural annotation	PF20911, MF_04133, NF041162, COG4397	NA	NA
UHGV-1996649_40	Structural annotation	PF21190, TIGR03511, COG4935	NA	NA
UHGV-1996649_46	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-1996649_47	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA