UHGV-1996922

Genome information

Genome length 28,502 bps

CDS count 46

Completeness 78.16% (medium-quality)

geNomad score 0.9494

Prediction confidence Confident

Genome information
Genome ID	UHGV-1996922
vOTU ID	vOTU-029776
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029066\|Ga0169219_10141
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9494
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.73
Jumbo phage	No

Genome content
Genome length	28,502 bps
GC content	43.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	88.70%
Average CDS length	553.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1996922_2	PHROG	phrog_24368	NA	unknown function
UHGV-1996922_2	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-1996922_3	PHROG	phrog_7566	NA	unknown function
UHGV-1996922_3	eggNOG-mapper	742740.HMPREF9474_04319	NA	NA
UHGV-1996922_4	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1996922_4	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1996922_4	UniRef90	UniRef90_R5MPV7	RNase H type-1 domain-containing protein	NA
UHGV-1996922_4	eggNOG-mapper	742740.HMPREF9474_04320	RNA-DNA hybrid ribonuclease activity	NA
UHGV-1996922_4	Pfam	PF00075	RNase H	RNase_H
UHGV-1996922_4	COG	COG0328	Ribonuclease HI	NA
UHGV-1996922_4	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1996922_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1996922_7	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-1996922_7	Structural annotation	PF11726	NA	NA
UHGV-1996922_12	PHROG	phrog_36464	NA	unknown function
UHGV-1996922_12	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-1996922_12	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-1996922_12	Structural annotation	PF09035	NA	NA
UHGV-1996922_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1996922_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1996922_14	UniRef90	UniRef90_A0A1C5PSE5	Predicted transcriptional regulator	NA
UHGV-1996922_14	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-1996922_14	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1996922_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1996922_14	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1996922_15	UniRef90	UniRef90_UPI00189D9B1A	zinc ribbon domain-containing protein	NA
UHGV-1996922_15	eggNOG-mapper	742740.HMPREF9474_04329	NA	NA
UHGV-1996922_16	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1996922_16	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1996922_16	UniRef90	UniRef90_A0A3A9B6W3	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-1996922_16	eggNOG-mapper	1507.HMPREF0262_01196	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1996922_16	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1996922_16	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1996922_16	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1996922_17	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1996922_17	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1996922_17	UniRef90	UniRef90_A0A7U9X503	Antitoxin HicB	NA
UHGV-1996922_17	eggNOG-mapper	1235798.C817_01899	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1996922_17	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1996922_17	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1996922_17	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1996922_18	KOfam	K14059	int; integrase	NA
UHGV-1996922_18	PHROG	phrog_1	integrase	integration and excision
UHGV-1996922_18	UniRef90	UniRef90_A0A1C6K4B6	Tyrosine recombinase XerD	NA
UHGV-1996922_18	eggNOG-mapper	742740.HMPREF9474_03478	DNA integration	NA
UHGV-1996922_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1996922_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1996922_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1996922_18	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1996922_19	UniRef90	UniRef90_A0A6N2SJV3	HicB family protein	NA
UHGV-1996922_19	eggNOG-mapper	1378168.N510_03076	NA	NA
UHGV-1996922_19	Pfam	PF19807	NA	DUF6290
UHGV-1996922_19	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-1996922_20	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-1996922_20	AcrCatalog	cluster_32378	NA	NA
UHGV-1996922_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1996922_22	PHROG	phrog_95	integrase	integration and excision
UHGV-1996922_22	UniRef90	UniRef90_R5MBZ3	Putative integrase bacteriophage 370.1	NA
UHGV-1996922_22	eggNOG-mapper	1157490.EL26_02935	Recombinase	NA
UHGV-1996922_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1996922_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-1996922_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1996922_22	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1996922_23	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1996922_23	PHROG	phrog_2649	endolysin	lysis
UHGV-1996922_23	UniRef90	UniRef90_R5LTY0	Peptidase_M15_4 domain-containing protein	NA
UHGV-1996922_23	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1996922_23	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-1996922_23	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1996922_23	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-1996922_24	PHROG	phrog_199	holin	lysis
UHGV-1996922_24	UniRef90	UniRef90_A0A414ADK3	Holin	NA
UHGV-1996922_24	eggNOG-mapper	411902.CLOBOL_05644	Bacteriophage holin family	NA
UHGV-1996922_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1996922_24	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1996922_24	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1996922_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1996922_25	Structural annotation	NF040910	NA	NA
UHGV-1996922_26	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-1996922_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1996922_30	PHROG	phrog_1	integrase	integration and excision
UHGV-1996922_30	UniRef90	UniRef90_A0A174H2W6	Integrase family protein	NA
UHGV-1996922_30	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-1996922_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1996922_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1996922_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1996922_31	UniRef90	UniRef90_UPI001899CC0D	BppU family phage baseplate upper protein	NA
UHGV-1996922_31	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1996922_31	Structural annotation	PF10651	NA	NA
UHGV-1996922_32	PHROG	phrog_12764	NA	unknown function
UHGV-1996922_32	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-1996922_33	PHROG	phrog_26795	NA	unknown function
UHGV-1996922_33	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-1996922_33	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1996922_34	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1996922_34	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-1996922_34	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1996922_34	NCBIFam	NF033679.1	DNRLRE domain-containing protein	NA
UHGV-1996922_34	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-1996922_35	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-1996922_35	UniRef90	UniRef90_A0A414AVE7	PhageMin_Tail domain-containing protein	NA
UHGV-1996922_35	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-1996922_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1996922_35	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1996922_37	PHROG	phrog_88	major tail protein	tail
UHGV-1996922_37	UniRef90	UniRef90_A0A414AVG1	Phage tail protein	NA
UHGV-1996922_37	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-1996922_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1996922_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1996922_38	Structural annotation	PF06141	NA	NA
UHGV-1996922_39	UniRef90	UniRef90_A0A1M7NK38	Phage protein, HK97 gp10 family	NA
UHGV-1996922_39	Structural annotation	TIGR01725	NA	NA
UHGV-1996922_40	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1996922_40	UniRef90	UniRef90_UPI000D6556D3	phage head closure protein	NA
UHGV-1996922_40	eggNOG-mapper	198094.BA_0471	head-tail adaptor	NA
UHGV-1996922_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1996922_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1996922_41	PHROG	phrog_5223	neck protein	connector
UHGV-1996922_41	UniRef90	UniRef90_A8SKP1	Putative phage DNA packaging protein	NA
UHGV-1996922_41	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-1996922_41	Structural annotation	TIGR01560	NA	NA
UHGV-1996922_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-1996922_42	UniRef90	UniRef90_A0A174XIH6	Phage major capsid protein, HK97 family	NA
UHGV-1996922_42	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1996922_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1996922_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1996922_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1996922_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1996922_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1996922_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1996922_43	UniRef90	UniRef90_A0A174XQS2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1996922_43	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1996922_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1996922_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1996922_43	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1996922_44	PHROG	phrog_12	portal protein	head and packaging
UHGV-1996922_44	UniRef90	UniRef90_UPI001D091636	phage portal protein	NA
UHGV-1996922_44	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1996922_44	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1996922_44	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1996922_44	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1996922_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1996922_45	UniRef90	UniRef90_A0A2T3EZM3	Terminase large subunit	NA
UHGV-1996922_45	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-1996922_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1996922_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1996922_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1996922_45	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1996922_46	PHROG	phrog_1066	NA	unknown function
UHGV-1996922_46	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-1996922_46	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA