UHGV-1997406

Genome information

Genome length 39,783 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9499

Prediction confidence Confident

Genome information
Genome ID	UHGV-1997406
vOTU ID	vOTU-009412
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029056\|Ga0169699_100057\|provirus_103091_142873
BioSample	SAMEA2580118
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9499
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.9
Jumbo phage	No

Genome content
Genome length	39,783 bps
GC content	26.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	92.97%
Average CDS length	518.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1997406_2	PHROG	phrog_24764	NA	unknown function
UHGV-1997406_2	UniRef90	UniRef90_A0A3D1PP10	TnpV protein	NA
UHGV-1997406_2	eggNOG-mapper	411902.CLOBOL_06472	Transposon-encoded protein TnpV	NA
UHGV-1997406_2	Pfam	PF14198	Transposon-encoded protein TnpV	TnpV
UHGV-1997406_2	Structural annotation	PF14198	NA	NA
UHGV-1997406_3	eggNOG-mapper	1211817.CCAT010000003_gene266	NA	NA
UHGV-1997406_3	AcrCatalog	cluster_36769	NA	NA
UHGV-1997406_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1997406_4	PHROG	phrog_95	integrase	integration and excision
UHGV-1997406_4	UniRef90	UniRef90_R7HHG7	Integrase	NA
UHGV-1997406_4	eggNOG-mapper	1111479.AXAR01000001_gene198	Recombinase	NA
UHGV-1997406_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1997406_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-1997406_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1997406_4	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1997406_6	KOfam	K14059	int; integrase	NA
UHGV-1997406_6	PHROG	phrog_1	integrase	integration and excision
UHGV-1997406_6	UniRef90	UniRef90_R5A639	Tyr recombinase domain-containing protein	NA
UHGV-1997406_6	eggNOG-mapper	764291.STRUR_2196	Belongs to the 'phage' integrase family	NA
UHGV-1997406_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1997406_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1997406_6	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1997406_7	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1997406_7	PHROG	phrog_8036	NA	unknown function
UHGV-1997406_7	UniRef90	UniRef90_R7P4T0	DNA-damage-inducible protein	NA
UHGV-1997406_7	eggNOG-mapper	1514668.JOOA01000001_gene65	BRO family, N-terminal domain	NA
UHGV-1997406_7	AcrCatalog	cluster_17589	NA	NA
UHGV-1997406_7	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1997406_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1997406_7	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-1997406_7	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1997406_7	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-1997406_8	PHROG	phrog_87	metallo-protease	other
UHGV-1997406_8	UniRef90	UniRef90_R5AAT8	Peptidase_M78 domain-containing protein	NA
UHGV-1997406_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1997406_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1997406_9	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-1997406_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1997406_10	UniRef90	UniRef90_R5A161	Helix-turn-helix domain protein	NA
UHGV-1997406_10	eggNOG-mapper	345219.Bcoa_0926	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1997406_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1997406_10	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1997406_12	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1997406_13	eggNOG-mapper	1449343.JQLQ01000002_gene672	NA	NA
UHGV-1997406_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1997406_15	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1997406_15	UniRef90	UniRef90_UPI000EA32791	DnaD domain protein	NA
UHGV-1997406_15	eggNOG-mapper	1415774.U728_1701	DnaD domain protein	NA
UHGV-1997406_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1997406_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1997406_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1997406_15	Structural annotation	TIGR01714	NA	NA
UHGV-1997406_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1997406_17	UniRef90	UniRef90_UPI0018AB5C6B	ERF family protein	NA
UHGV-1997406_17	eggNOG-mapper	536232.CLM_1632	ERF superfamily	NA
UHGV-1997406_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-1997406_17	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1997406_18	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1997406_18	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1997406_18	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1997406_21	eggNOG-mapper	1123263.AUKY01000096_gene1822	C-5 cytosine-specific DNA methylase	NA
UHGV-1997406_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1997406_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1997406_23	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1997406_23	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-1997406_23	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1997406_24	PHROG	phrog_1123	NA	unknown function
UHGV-1997406_24	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-1997406_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1997406_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1997406_25	UniRef90	UniRef90_A0A7X6XBF9	Single-stranded DNA-binding protein	NA
UHGV-1997406_25	eggNOG-mapper	1034347.CAHJ01000081_gene1438	Single-strand binding protein family	NA
UHGV-1997406_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1997406_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1997406_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1997406_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1997406_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1997406_29	Structural annotation	PF09947	NA	NA
UHGV-1997406_42	Structural annotation	PF07011, MF_00683, NF041454	NA	NA
UHGV-1997406_43	PHROG	phrog_98	NA	unknown function
UHGV-1997406_43	UniRef90	UniRef90_UPI0018CFC757	YopX family protein	NA
UHGV-1997406_43	eggNOG-mapper	756499.Desde_0284	PFAM YopX protein	NA
UHGV-1997406_43	Pfam	PF09643	YopX protein	YopX
UHGV-1997406_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1997406_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1997406_44	Structural annotation	PF16360	NA	NA
UHGV-1997406_45	PHROG	phrog_20735	NA	unknown function
UHGV-1997406_45	UniRef90	UniRef90_R5A140	RNA_ligase domain-containing protein	NA
UHGV-1997406_45	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-1997406_45	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-1997406_46	Structural annotation	PF15456	NA	NA
UHGV-1997406_48	Structural annotation	PF10922	NA	NA
UHGV-1997406_49	UniRef90	UniRef90_A0A353JAA0	Terminase_3 domain-containing protein (Fragment)	NA
UHGV-1997406_49	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-1997406_50	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1997406_50	PHROG	phrog_10250	NA	unknown function
UHGV-1997406_50	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-1997406_50	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-1997406_50	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1997406_50	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1997406_50	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1997406_50	COG	COG1783	Phage terminase large subunit	NA
UHGV-1997406_50	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1997406_51	PHROG	phrog_533	portal protein	head and packaging
UHGV-1997406_51	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-1997406_51	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-1997406_51	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1997406_52	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1997406_52	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-1997406_52	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-1997406_52	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1997406_52	COG	COG2369	NA	NA
UHGV-1997406_52	Structural annotation	PF06152	NA	NA
UHGV-1997406_53	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1997406_53	UniRef90	UniRef90_UPI00038D7E83	minor capsid protein	NA
UHGV-1997406_53	eggNOG-mapper	1151292.QEW_3259	Phage Mu protein F like protein	NA
UHGV-1997406_53	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-1997406_53	COG	COG2369	NA	NA
UHGV-1997406_55	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1997406_55	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-1997406_55	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-1997406_55	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1997406_55	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1997406_56	PHROG	phrog_422	major head protein	head and packaging
UHGV-1997406_56	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-1997406_56	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-1997406_56	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1997406_58	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1997406_58	UniRef90	UniRef90_C4IFE6	Putative gp8	NA
UHGV-1997406_58	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-1997406_59	PHROG	phrog_3366	NA	unknown function
UHGV-1997406_59	Structural annotation	PF20536	NA	NA
UHGV-1997406_60	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-1997406_60	Structural annotation	PF11114	NA	NA
UHGV-1997406_61	PHROG	phrog_3266	tail completion	connector
UHGV-1997406_61	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-1997406_61	Structural annotation	PF12691	NA	NA
UHGV-1997406_62	PHROG	phrog_3099	NA	unknown function
UHGV-1997406_62	eggNOG-mapper	1232449.BAHV02000010_gene2720	NA	NA
UHGV-1997406_62	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1997406_63	Structural annotation	PF10666	NA	NA
UHGV-1997406_64	PHROG	phrog_706	NA	unknown function
UHGV-1997406_64	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-1997406_64	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-1997406_64	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1997406_64	Structural annotation	PF06854	NA	NA
UHGV-1997406_65	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1997406_65	eggNOG-mapper	1140002.I570_01433	SLT domain	NA
UHGV-1997406_65	Pfam	PF11155	NA	DUF2935
UHGV-1997406_65	COG	COG3953	SLT domain protein	NA
UHGV-1997406_66	eggNOG-mapper	1235796.C815_00906	NA	NA
UHGV-1997406_67	PHROG	phrog_372	tail protein	tail
UHGV-1997406_67	UniRef90	UniRef90_UPI0011A17785	NA	NA
UHGV-1997406_67	eggNOG-mapper	908340.HMPREF9406_0178	NA	NA
UHGV-1997406_67	Pfam	PF05895	NA	DUF859
UHGV-1997406_67	COG	COG4675	Phage tail collar domain	NA
UHGV-1997406_67	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-1997406_68	PHROG	phrog_372	tail protein	tail
UHGV-1997406_68	eggNOG-mapper	445971.ANASTE_00730	nuclear chromosome segregation	NA
UHGV-1997406_68	Pfam	PF05895	NA	DUF859
UHGV-1997406_68	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1997406_70	Structural annotation	PF06946	NA	NA
UHGV-1997406_71	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1997406_71	PHROG	phrog_894	endolysin	lysis
UHGV-1997406_71	UniRef90	UniRef90_A0A8A2W3W1	Peptidoglycan-binding protein	NA
UHGV-1997406_71	eggNOG-mapper	903814.ELI_0060	Peptidase M15	NA
UHGV-1997406_71	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1997406_71	COG	COG3108	NA	NA
UHGV-1997406_72	PHROG	phrog_7566	NA	unknown function