UHGV-1997884

Genome information

Genome length 39,571 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-1997884
vOTU ID	vOTU-011137
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029023\|Ga0169679_100174\|provirus_8826_51872
BioSample	SAMEA2580098
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.62
Jumbo phage	No

Genome content
Genome length	39,571 bps
GC content	40.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.76%
Average CDS length	614.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1997884_1	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1997884_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1997884_1	UniRef90	UniRef90_A0A1Q6SLN5	XRE family transcriptional regulator	NA
UHGV-1997884_1	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-1997884_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1997884_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1997884_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1997884_1	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1997884_2	UniRef90	UniRef90_A0A1Q6SM01	Transcriptional regulator	NA
UHGV-1997884_2	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-1997884_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1997884_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1997884_6	PHROG	phrog_3292	NA	unknown function
UHGV-1997884_6	UniRef90	UniRef90_UPI0009E41703	KTSC domain-containing protein	NA
UHGV-1997884_6	eggNOG-mapper	1408823.AXUS01000024_gene2707	KTSC domain	NA
UHGV-1997884_6	Pfam	PF13619	KTSC domain	KTSC
UHGV-1997884_6	COG	COG4249	NA	NA
UHGV-1997884_6	Structural annotation	PF13619	NA	NA
UHGV-1997884_12	PHROG	phrog_6058	NA	unknown function
UHGV-1997884_12	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-1997884_12	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-1997884_12	Structural annotation	PF12728, NF040990	NA	NA
UHGV-1997884_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1997884_13	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-1997884_13	Structural annotation	PF21578	NA	NA
UHGV-1997884_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1997884_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1997884_14	UniRef90	UniRef90_A0A1Q6SME2	RNase H type-1 domain-containing protein	NA
UHGV-1997884_14	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-1997884_14	Pfam	PF00075	RNase H	RNase_H
UHGV-1997884_14	COG	COG0328	Ribonuclease HI	NA
UHGV-1997884_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1997884_15	PHROG	phrog_824	NA	unknown function
UHGV-1997884_15	UniRef90	UniRef90_UPI00164B300C	VRR-NUC domain-containing protein	NA
UHGV-1997884_15	eggNOG-mapper	1235793.C809_01905	VRR-NUC domain	NA
UHGV-1997884_15	Structural annotation	PF08774	NA	NA
UHGV-1997884_16	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-1997884_17	PHROG	phrog_4433	NA	unknown function
UHGV-1997884_17	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-1997884_17	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1997884_17	Structural annotation	PF12120, NF000318	NA	NA
UHGV-1997884_18	PHROG	phrog_8470	NA	unknown function
UHGV-1997884_18	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-1997884_18	eggNOG-mapper	1235792.C808_01137	PcfJ-like protein	NA
UHGV-1997884_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1997884_18	Structural annotation	PF14284	NA	NA
UHGV-1997884_19	PHROG	phrog_15077	NA	unknown function
UHGV-1997884_19	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-1997884_19	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-1997884_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1997884_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1997884_26	PHROG	phrog_1	integrase	integration and excision
UHGV-1997884_26	UniRef90	UniRef90_A0A351URM1	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-1997884_26	eggNOG-mapper	1304866.K413DRAFT_3024	Belongs to the 'phage' integrase family	NA
UHGV-1997884_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1997884_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1997884_26	Structural annotation	PF00589, PF13495, MF_01808, NF001399, COG4974	NA	NA
UHGV-1997884_28	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1997884_28	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-1997884_28	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-1997884_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1997884_28	COG	COG5484	NA	NA
UHGV-1997884_28	Structural annotation	PF06056, NF040601	NA	NA
UHGV-1997884_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1997884_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1997884_29	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-1997884_29	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-1997884_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1997884_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1997884_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-1997884_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1997884_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-1997884_30	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-1997884_30	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-1997884_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1997884_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1997884_31	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-1997884_31	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-1997884_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1997884_31	COG	COG2369	NA	NA
UHGV-1997884_31	Structural annotation	PF06152	NA	NA
UHGV-1997884_32	PHROG	phrog_15041	NA	unknown function
UHGV-1997884_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1997884_33	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-1997884_33	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1997884_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1997884_33	Structural annotation	PF06810	NA	NA
UHGV-1997884_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-1997884_34	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-1997884_34	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1997884_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1997884_37	PHROG	phrog_3366	NA	unknown function
UHGV-1997884_37	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-1997884_37	Pfam	PF20536	NA	DUF6751
UHGV-1997884_37	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-1997884_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1997884_38	UniRef90	UniRef90_UPI001D069E73	minor capsid protein	NA
UHGV-1997884_38	eggNOG-mapper	645991.Sgly_0344	NA	NA
UHGV-1997884_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1997884_38	Structural annotation	PF11114	NA	NA
UHGV-1997884_39	PHROG	phrog_3266	tail completion	connector
UHGV-1997884_39	Structural annotation	PF12691	NA	NA
UHGV-1997884_40	PHROG	phrog_3099	NA	unknown function
UHGV-1997884_40	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-1997884_40	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-1997884_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1997884_41	PHROG	phrog_11299	NA	unknown function
UHGV-1997884_41	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-1997884_41	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-1997884_41	Structural annotation	PF10666	NA	NA
UHGV-1997884_42	PHROG	phrog_706	NA	unknown function
UHGV-1997884_42	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-1997884_42	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-1997884_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1997884_42	Structural annotation	PF06854	NA	NA
UHGV-1997884_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1997884_43	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-1997884_43	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-1997884_43	COG	COG5283	Phage-related tail protein	NA
UHGV-1997884_43	Structural annotation	PF11172	NA	NA
UHGV-1997884_44	PHROG	phrog_1194	NA	unknown function
UHGV-1997884_44	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-1997884_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1997884_45	PHROG	phrog_13879	NA	unknown function
UHGV-1997884_45	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-1997884_45	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1997884_47	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-1997884_47	PHROG	phrog_11157	NA	unknown function
UHGV-1997884_47	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-1997884_47	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-1997884_47	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1997884_47	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1997884_47	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-1997884_47	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1997884_48	PHROG	phrog_18725	NA	unknown function
UHGV-1997884_48	UniRef90	UniRef90_UPI001C0CBD9B	PF13754 domain-containing protein	NA
UHGV-1997884_48	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-1997884_48	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1997884_51	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1997884_51	Structural annotation	NF040910	NA	NA
UHGV-1997884_54	PHROG	phrog_199	holin	lysis
UHGV-1997884_54	UniRef90	UniRef90_A0A414REB4	Holin	NA
UHGV-1997884_54	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-1997884_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1997884_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1997884_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1997884_55	KOfam	K07273	acm; lysozyme	NA
UHGV-1997884_55	PHROG	phrog_291	endolysin	lysis
UHGV-1997884_55	UniRef90	UniRef90_R9KRP9	PG_binding_1 domain-containing protein	NA
UHGV-1997884_55	eggNOG-mapper	1235793.C809_01934	Glycosyl hydrolases family 25	NA
UHGV-1997884_55	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1997884_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1997884_55	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1997884_55	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-1997884_56	UniRef90	UniRef90_UPI001C105AE6	NA	NA
UHGV-1997884_56	eggNOG-mapper	1235793.C809_03755	NA	NA
UHGV-1997884_56	Pfam	PF18941	NA	DUF5688
UHGV-1997884_56	Structural annotation	PF18941, MF_01548, NF010189, COG4848	NA	NA
UHGV-1997884_58	KOfam	K01006	ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]	NA
UHGV-1997884_58	PHROG	phrog_18609	kinase	other
UHGV-1997884_58	UniRef90	UniRef90_E0S269	Pyruvate, phosphate dikinase	NA
UHGV-1997884_58	eggNOG-mapper	511680.BUTYVIB_01917	PEP-utilising enzyme, TIM barrel domain	NA
UHGV-1997884_58	Pfam	PF01326	Pyruvate phosphate dikinase, AMP/ATP-binding domain	PPDK_N
UHGV-1997884_58	Pfam	PF00391	PEP-utilising enzyme, mobile domain	PEP-utilizers
UHGV-1997884_58	Pfam	PF02896	PEP-utilising enzyme, PEP-binding domain	PEP-utilizers_C
UHGV-1997884_58	NCBIFam	TIGR01828.1	pyruvate, phosphate dikinase	NA
UHGV-1997884_58	COG	COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	NA
UHGV-1997884_58	Structural annotation	PF02896, PF01326, PF00391, MF_00681, TIGR01828, COG0574	NA	NA