UHGV-1998818

Genome information

Genome length 33,723 bps

CDS count 52

Completeness 94.19% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-1998818
vOTU ID	vOTU-014207
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023498\|Ga0257046_100004\|provirus_326968_360690
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.76
Jumbo phage	No

Genome content
Genome length	33,723 bps
GC content	45.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.86%
Average CDS length	620.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1998818_1	KOfam	K14059	int; integrase	NA
UHGV-1998818_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1998818_1	UniRef90	UniRef90_A0A1Q6MGA4	Site-specific integrase	NA
UHGV-1998818_1	eggNOG-mapper	742741.HMPREF9475_00397	Phage integrase family	NA
UHGV-1998818_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1998818_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1998818_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1998818_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1998818_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1998818_2	UniRef90	UniRef90_A0A1Q6MG32	HicB family protein	NA
UHGV-1998818_2	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1998818_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1998818_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1998818_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1998818_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1998818_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1998818_3	UniRef90	UniRef90_A0A3R6X664	Addiction module toxin, HicA family	NA
UHGV-1998818_3	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1998818_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1998818_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1998818_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1998818_5	PHROG	phrog_8043	NA	unknown function
UHGV-1998818_5	UniRef90	UniRef90_A0A1Q6MG25	HIRAN domain-containing protein	NA
UHGV-1998818_5	eggNOG-mapper	1336234.JAGN01000004_gene559	HIRAN domain	NA
UHGV-1998818_5	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-1998818_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1998818_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1998818_6	UniRef90	UniRef90_A0A1Q6MG49	HTH cro/C1-type domain-containing protein	NA
UHGV-1998818_6	eggNOG-mapper	706434.HMPREF9429_00405	Peptidase S24-like	NA
UHGV-1998818_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1998818_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1998818_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1998818_6	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-1998818_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1998818_7	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1998818_7	UniRef90	UniRef90_A0A822LL88	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-1998818_7	eggNOG-mapper	568703.LGG_00374	DNA-binding helix-turn-helix protein	NA
UHGV-1998818_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1998818_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1998818_7	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1998818_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1998818_11	KOfam	K03744	lemA; LemA protein	NA
UHGV-1998818_11	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-1998818_11	UniRef90	UniRef90_A0A1Q6MG17	LemA family protein	NA
UHGV-1998818_11	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-1998818_11	Pfam	PF04011	LemA family	LemA
UHGV-1998818_11	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-1998818_11	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-1998818_12	PHROG	phrog_3886	NA	unknown function
UHGV-1998818_12	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-1998818_14	Structural annotation	PF19005	NA	NA
UHGV-1998818_15	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1998818_15	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1998818_15	UniRef90	UniRef90_UPI0019570FFD	N-6 DNA methylase	NA
UHGV-1998818_15	eggNOG-mapper	1401067.HMPREF0872_03510	type I restriction-modification system	NA
UHGV-1998818_15	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1998818_15	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1998818_15	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1998818_16	PHROG	phrog_6058	NA	unknown function
UHGV-1998818_16	UniRef90	UniRef90_A0A7X9GS36	Helix-turn-helix domain-containing protein	NA
UHGV-1998818_16	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-1998818_16	Structural annotation	PF12728, NF033787	NA	NA
UHGV-1998818_17	Pfam	PF09874	NA	DUF2101
UHGV-1998818_18	PHROG	phrog_20014	NA	unknown function
UHGV-1998818_18	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-1998818_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1998818_19	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-1998818_19	Structural annotation	PF01446	NA	NA
UHGV-1998818_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1998818_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1998818_20	UniRef90	UniRef90_A0A1Q6MG39	RNase H type-1 domain-containing protein	NA
UHGV-1998818_20	eggNOG-mapper	123214.PERMA_0423	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1998818_20	Pfam	PF00075	RNase H	RNase_H
UHGV-1998818_20	COG	COG0328	Ribonuclease HI	NA
UHGV-1998818_21	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-1998818_22	PHROG	phrog_8470	NA	unknown function
UHGV-1998818_22	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-1998818_22	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-1998818_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1998818_22	Structural annotation	PF14284	NA	NA
UHGV-1998818_23	PHROG	phrog_15077	NA	unknown function
UHGV-1998818_23	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-1998818_23	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-1998818_23	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1998818_24	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-1998818_26	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-1998818_27	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-1998818_28	PHROG	phrog_7566	NA	unknown function
UHGV-1998818_28	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-1998818_29	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1998818_29	UniRef90	UniRef90_A0A3D5LSK2	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1998818_29	eggNOG-mapper	1095750.HMPREF9970_1671	NA	NA
UHGV-1998818_29	Pfam	PF14359	NA	DUF4406
UHGV-1998818_29	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1998818_29	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-1998818_30	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-1998818_31	PHROG	phrog_625	NA	unknown function
UHGV-1998818_31	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-1998818_31	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-1998818_31	Structural annotation	PF12961	NA	NA
UHGV-1998818_33	PHROG	phrog_11237	NA	unknown function
UHGV-1998818_33	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-1998818_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1998818_34	UniRef90	UniRef90_A0A1Q6MG73	HNH domain-containing protein	NA
UHGV-1998818_34	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-1998818_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1998818_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1998818_35	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1998818_35	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-1998818_35	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-1998818_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1998818_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1998818_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1998818_36	UniRef90	UniRef90_A0A1Q6MG31	Terminase	NA
UHGV-1998818_36	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1998818_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1998818_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1998818_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1998818_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1998818_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-1998818_37	UniRef90	UniRef90_A0A1Q6MFZ4	Phage portal protein	NA
UHGV-1998818_37	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1998818_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1998818_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1998818_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1998818_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1998818_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1998818_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1998818_38	UniRef90	UniRef90_A0A1Q6MG19	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1998818_38	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1998818_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1998818_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1998818_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1998818_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-1998818_39	UniRef90	UniRef90_W0FH89	MAjor capsid protein a	NA
UHGV-1998818_39	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-1998818_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1998818_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1998818_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1998818_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1998818_40	PHROG	phrog_749	NA	unknown function
UHGV-1998818_40	UniRef90	UniRef90_W0FM58	Gp6 protein	NA
UHGV-1998818_40	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1998818_41	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1998818_41	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-1998818_41	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-1998818_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1998818_42	eggNOG-mapper	1384484.AEQU_1177	NA	NA
UHGV-1998818_42	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1998818_43	PHROG	phrog_5509	neck protein	connector
UHGV-1998818_43	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-1998818_43	eggNOG-mapper	1347392.CCEZ01000045_gene11	NA	NA
UHGV-1998818_43	Structural annotation	TIGR01725	NA	NA
UHGV-1998818_44	UniRef90	UniRef90_A0A374TPV8	Phage tail protein	NA
UHGV-1998818_44	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-1998818_44	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1998818_46	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1998818_46	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1998818_46	UniRef90	UniRef90_A0A1Q6MG21	PhageMin_Tail domain-containing protein	NA
UHGV-1998818_46	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-1998818_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1998818_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1998818_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1998818_47	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-1998818_47	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1998818_48	PHROG	phrog_538	minor tail protein	tail
UHGV-1998818_48	UniRef90	UniRef90_W0FH81	Phage head fiber protein	NA
UHGV-1998818_48	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-1998818_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1998818_48	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1998818_49	PHROG	phrog_13141	NA	unknown function
UHGV-1998818_49	UniRef90	UniRef90_A2F9B0	Gp1-related protein	NA
UHGV-1998818_49	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-1998818_49	Structural annotation	PF20747	NA	NA
UHGV-1998818_50	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-1998818_51	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA
UHGV-1998818_52	PHROG	phrog_199	holin	lysis
UHGV-1998818_52	UniRef90	UniRef90_A0A173W8Y4	Phage-related holin (Lysis protein)	NA
UHGV-1998818_52	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-1998818_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1998818_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1998818_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1998818_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA