UHGV-2000390

Genome information

Genome length 36,634 bps

CDS count 50

Completeness 98.69% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-2000390
vOTU ID	vOTU-014322
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029000\|Ga0169663_100014\|provirus_73773_110406
BioSample	SAMEA2580082
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.16
Jumbo phage	No

Genome content
Genome length	36,634 bps
GC content	41.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.66%
Average CDS length	654.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2000390_1	KOfam	K00016	LDH, ldh; L-lactate dehydrogenase [EC:1.1.1.27]	NA
UHGV-2000390_1	UniRef90	UniRef90_R6WUD5	L-lactate dehydrogenase	NA
UHGV-2000390_1	eggNOG-mapper	1235799.C818_03189	lactate/malate dehydrogenase, alpha/beta C-terminal domain	NA
UHGV-2000390_1	Pfam	PF00056	lactate/malate dehydrogenase, NAD binding domain	Ldh_1_N
UHGV-2000390_1	Pfam	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain	Ldh_1_C
UHGV-2000390_1	NCBIFam	NF000824.0	L-lactate dehydrogenase	NA
UHGV-2000390_1	COG	COG0039	Malate/lactate dehydrogenase	NA
UHGV-2000390_1	HAMAP	MF_00488	L-lactate dehydrogenase [ldh]	NA
UHGV-2000390_1	Structural annotation	PF00056, PF02866, MF_00488, NF000824, COG0039	NA	NA
UHGV-2000390_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2000390_2	PHROG	phrog_435	endolysin	lysis
UHGV-2000390_2	UniRef90	UniRef90_UPI001915CE21	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2000390_2	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2000390_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2000390_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2000390_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2000390_2	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-2000390_3	PHROG	phrog_443	holin	lysis
UHGV-2000390_3	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-2000390_3	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-2000390_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2000390_3	Structural annotation	PF16945	NA	NA
UHGV-2000390_4	PHROG	phrog_937	hemolysin	other
UHGV-2000390_4	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-2000390_5	PHROG	phrog_5056	NA	unknown function
UHGV-2000390_5	eggNOG-mapper	665950.HMPREF1025_02516	NA	NA
UHGV-2000390_5	Structural annotation	NF040910	NA	NA
UHGV-2000390_6	PHROG	phrog_5056	NA	unknown function
UHGV-2000390_6	eggNOG-mapper	1033738.CAEP01000136_gene2875	NA	NA
UHGV-2000390_6	Structural annotation	NF040910	NA	NA
UHGV-2000390_7	PHROG	phrog_12931	NA	unknown function
UHGV-2000390_7	eggNOG-mapper	665950.HMPREF1025_02518	NA	NA
UHGV-2000390_8	PHROG	phrog_9994	NA	unknown function
UHGV-2000390_8	UniRef90	UniRef90_UPI000C7605CE	H-type lectin domain-containing protein	NA
UHGV-2000390_8	eggNOG-mapper	411468.CLOSCI_00275	NA	NA
UHGV-2000390_9	PHROG	phrog_538	minor tail protein	tail
UHGV-2000390_9	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2000390_9	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-2000390_9	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2000390_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2000390_10	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-2000390_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2000390_11	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2000390_11	UniRef90	UniRef90_UPI000C7738DA	phage tail tape measure protein	NA
UHGV-2000390_11	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-2000390_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2000390_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2000390_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2000390_12	PHROG	phrog_706	NA	unknown function
UHGV-2000390_12	UniRef90	UniRef90_UPI000C78ADA7	Gp15 family bacteriophage protein	NA
UHGV-2000390_12	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-2000390_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2000390_12	Structural annotation	PF06854	NA	NA
UHGV-2000390_13	Structural annotation	PF10666	NA	NA
UHGV-2000390_14	PHROG	phrog_820	major tail protein	tail
UHGV-2000390_14	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-2000390_14	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-2000390_14	COG	COG5492	NA	NA
UHGV-2000390_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2000390_15	PHROG	phrog_913	minor head protein	head and packaging
UHGV-2000390_15	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-2000390_15	Structural annotation	PF12691	NA	NA
UHGV-2000390_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2000390_16	UniRef90	UniRef90_UPI000C7679F4	minor capsid protein	NA
UHGV-2000390_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2000390_16	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2000390_17	PHROG	phrog_793	head-tail adaptor	connector
UHGV-2000390_17	UniRef90	UniRef90_UPI000C77160F	putative minor capsid protein	NA
UHGV-2000390_17	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-2000390_17	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-2000390_17	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-2000390_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2000390_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2000390_18	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-2000390_18	eggNOG-mapper	997296.PB1_16199	NA	NA
UHGV-2000390_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-2000390_19	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-2000390_19	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-2000390_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2000390_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2000390_20	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-2000390_21	KOfam	K07584	NA	NA
UHGV-2000390_21	PHROG	phrog_4478	peptidase	other
UHGV-2000390_21	UniRef90	UniRef90_UPI000C7705CC	ribosomal-processing cysteine protease Prp	NA
UHGV-2000390_21	eggNOG-mapper	1235792.C808_04675	Cysteine protease Prp	NA
UHGV-2000390_21	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2000390_21	COG	COG2868	NA	NA
UHGV-2000390_21	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2000390_22	PHROG	phrog_1233	NA	unknown function
UHGV-2000390_22	UniRef90	UniRef90_A0A855HLY8	Peptidase_M78 domain-containing protein	NA
UHGV-2000390_22	eggNOG-mapper	476272.RUMHYD_02850	NA	NA
UHGV-2000390_22	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2000390_22	Structural annotation	PF06114	NA	NA
UHGV-2000390_23	PHROG	phrog_27009	NA	unknown function
UHGV-2000390_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2000390_24	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-2000390_24	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-2000390_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2000390_24	COG	COG2369	NA	NA
UHGV-2000390_24	Structural annotation	PF06152	NA	NA
UHGV-2000390_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-2000390_25	UniRef90	UniRef90_UPI000C79119B	phage portal protein	NA
UHGV-2000390_25	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-2000390_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2000390_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2000390_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2000390_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2000390_26	UniRef90	UniRef90_UPI0013563028	PBSX family phage terminase large subunit	NA
UHGV-2000390_26	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-2000390_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2000390_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2000390_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2000390_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2000390_27	PHROG	phrog_2412	NA	unknown function
UHGV-2000390_27	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-2000390_27	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-2000390_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2000390_28	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-2000390_28	eggNOG-mapper	97139.C824_05976	sigma factor activity	NA
UHGV-2000390_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2000390_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2000390_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2000390_30	PHROG	phrog_15198	NA	unknown function
UHGV-2000390_30	UniRef90	UniRef90_A0A3A5TWI3	NA	NA
UHGV-2000390_30	Pfam	PF04448	NA	DUF551
UHGV-2000390_31	PHROG	phrog_5051	NA	unknown function
UHGV-2000390_32	eggNOG-mapper	1298920.KI911353_gene2704	NA	NA
UHGV-2000390_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2000390_35	PHROG	phrog_1	integrase	integration and excision
UHGV-2000390_35	UniRef90	UniRef90_A0A8E3SGK1	Tyrosine-type recombinase/integrase	NA
UHGV-2000390_35	eggNOG-mapper	1304866.K413DRAFT_1209	Belongs to the 'phage' integrase family	NA
UHGV-2000390_35	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2000390_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2000390_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2000390_35	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2000390_36	eggNOG-mapper	1235798.C817_03496	NA	NA
UHGV-2000390_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2000390_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2000390_37	UniRef90	UniRef90_A0A3A9F5Y5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2000390_37	eggNOG-mapper	1235798.C817_03497	Endodeoxyribonuclease RusA	NA
UHGV-2000390_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2000390_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2000390_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2000390_38	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2000390_38	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2000390_38	UniRef90	UniRef90_A6BET8	Primase C terminal 2 (PriCT-2)	NA
UHGV-2000390_38	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-2000390_38	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2000390_38	Pfam	PF13481	AAA domain	AAA_25
UHGV-2000390_38	COG	COG3598	RecA-family ATPase	NA
UHGV-2000390_38	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2000390_39	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2000390_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2000390_39	UniRef90	UniRef90_A0A396PVV7	ATP-dependent helicase	NA
UHGV-2000390_39	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-2000390_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2000390_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2000390_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2000390_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2000390_39	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2000390_40	PHROG	phrog_2698	NA	unknown function
UHGV-2000390_40	UniRef90	UniRef90_D9R8Z5	NA	NA
UHGV-2000390_40	eggNOG-mapper	411462.DORLON_00810	NA	NA
UHGV-2000390_40	Structural annotation	PF05037	NA	NA
UHGV-2000390_41	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2000390_41	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-2000390_41	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-2000390_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-2000390_41	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2000390_42	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2000390_42	PHROG	phrog_1499	NA	unknown function
UHGV-2000390_42	UniRef90	UniRef90_R9JRT0	AAA_23 domain-containing protein	NA
UHGV-2000390_42	eggNOG-mapper	1235792.C808_05391	AAA domain	NA
UHGV-2000390_42	Pfam	PF13476	AAA domain	AAA_23
UHGV-2000390_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2000390_42	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2000390_45	PHROG	phrog_585	NA	unknown function
UHGV-2000390_45	UniRef90	UniRef90_UPI00129D2984	NA	NA
UHGV-2000390_45	eggNOG-mapper	526218.Sterm_0828	NA	NA
UHGV-2000390_45	Pfam	PF10711	NA	DUF2513
UHGV-2000390_45	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2000390_47	UniRef90	UniRef90_UPI001D063892	helix-turn-helix transcriptional regulator	NA
UHGV-2000390_47	eggNOG-mapper	1226325.HMPREF1548_00560	NA	NA
UHGV-2000390_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2000390_47	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2000390_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2000390_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2000390_48	UniRef90	UniRef90_UPI001B3918A3	helix-turn-helix domain-containing protein	NA
UHGV-2000390_48	eggNOG-mapper	97138.C820_00275	Helix-turn-helix XRE-family like proteins	NA
UHGV-2000390_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2000390_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2000390_48	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-2000390_50	KOfam	K14059	int; integrase	NA
UHGV-2000390_50	PHROG	phrog_1	integrase	integration and excision
UHGV-2000390_50	UniRef90	UniRef90_UPI00040E88F0	site-specific integrase	NA
UHGV-2000390_50	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-2000390_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2000390_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2000390_50	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA