UHGV-2000463

Genome information

vOTU vOTU-019860

Genome length 23,056 bps

CDS count 36

Completeness 60.63% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-2000463
vOTU ID	vOTU-019860
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029026\|Ga0169630_100420\|provirus_4949_28004
BioSample	SAMEA2580049
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.07
Jumbo phage	No

Genome content
Genome length	23,056 bps
GC content	42.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	94.50%
Average CDS length	608.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2000463_2	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2000463_2	UniRef90	UniRef90_A0A1C7I464	AP2/ERF domain-containing protein	NA
UHGV-2000463_2	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-2000463_2	Structural annotation	PF00847, TIGR03826	NA	NA
UHGV-2000463_3	UniRef90	UniRef90_UPI00082E087A	helix-turn-helix domain-containing protein	NA
UHGV-2000463_3	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-2000463_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2000463_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2000463_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2000463_4	UniRef90	UniRef90_A0A345MLR2	Chromosome partitioning protein	NA
UHGV-2000463_5	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-2000463_5	PHROG	phrog_670	endolysin	lysis
UHGV-2000463_5	UniRef90	UniRef90_UPI0001F01DD6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2000463_5	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-2000463_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2000463_5	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2000463_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2000463_5	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-2000463_6	PHROG	phrog_443	holin	lysis
UHGV-2000463_6	UniRef90	UniRef90_A0A1I0HNR6	Holin, r1t family	NA
UHGV-2000463_6	eggNOG-mapper	397290.C810_03257	Putative lactococcus lactis phage r1t holin	NA
UHGV-2000463_6	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2000463_6	Structural annotation	PF16945	NA	NA
UHGV-2000463_9	PHROG	phrog_2566	NA	unknown function
UHGV-2000463_9	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-2000463_9	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-2000463_10	PHROG	phrog_6616	tail protein	tail
UHGV-2000463_10	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-2000463_10	eggNOG-mapper	1415775.U729_2618	Phage minor structural protein	NA
UHGV-2000463_10	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2000463_10	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2000463_11	PHROG	phrog_1401	NA	unknown function
UHGV-2000463_11	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-2000463_11	Structural annotation	PF07761	NA	NA
UHGV-2000463_12	PHROG	phrog_1194	NA	unknown function
UHGV-2000463_12	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2000463_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2000463_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2000463_13	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-2000463_13	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2000463_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2000463_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2000463_14	PHROG	phrog_8355	NA	unknown function
UHGV-2000463_14	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-2000463_14	eggNOG-mapper	1282664.H354_06706	NA	NA
UHGV-2000463_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2000463_14	Structural annotation	PF06854	NA	NA
UHGV-2000463_15	PHROG	phrog_8300	NA	unknown function
UHGV-2000463_15	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-2000463_15	Structural annotation	PF06854	NA	NA
UHGV-2000463_16	PHROG	phrog_820	major tail protein	tail
UHGV-2000463_16	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2000463_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2000463_17	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2000463_17	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-2000463_17	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-2000463_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2000463_17	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2000463_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2000463_18	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2000463_19	PHROG	phrog_8710	NA	unknown function
UHGV-2000463_19	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2000463_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2000463_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2000463_20	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-2000463_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2000463_21	UniRef90	UniRef90_UPI001D0613D8	phage capsid protein	NA
UHGV-2000463_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2000463_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2000463_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2000463_22	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-2000463_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2000463_23	Structural annotation	PF01281	NA	NA
UHGV-2000463_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2000463_25	UniRef90	UniRef90_A0A414EGE0	Minor capsid protein	NA
UHGV-2000463_25	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2000463_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2000463_25	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2000463_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2000463_26	eggNOG-mapper	585501.HMPREF6123_0840	NA	NA
UHGV-2000463_26	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2000463_27	PHROG	phrog_25639	NA	unknown function
UHGV-2000463_27	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-2000463_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2000463_28	UniRef90	UniRef90_UPI001D072FCD	capsid protein	NA
UHGV-2000463_28	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2000463_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-2000463_29	UniRef90	UniRef90_A0A357AZC3	Capsid protein (Fragment)	NA
UHGV-2000463_29	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2000463_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2000463_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2000463_30	UniRef90	UniRef90_UPI001D0867BB	terminase	NA
UHGV-2000463_30	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-2000463_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2000463_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2000463_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2000463_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2000463_31	UniRef90	UniRef90_UPI001D070DF1	terminase small subunit	NA
UHGV-2000463_31	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-2000463_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2000463_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2000463_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2000463_32	PHROG	phrog_1233	NA	unknown function
UHGV-2000463_32	eggNOG-mapper	411490.ANACAC_00786	NA	NA
UHGV-2000463_33	UniRef90	UniRef90_A0A096BXT9	Sugar ABC transporter substrate-binding protein	NA
UHGV-2000463_33	eggNOG-mapper	1401067.HMPREF0872_03940	NA	NA
UHGV-2000463_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2000463_34	UniRef90	UniRef90_UPI0011C7CB46	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2000463_34	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-2000463_34	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2000463_34	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2000463_35	AcrCatalog	cluster_72382	NA	NA
UHGV-2000463_36	PHROG	phrog_1974	NA	unknown function
UHGV-2000463_36	UniRef90	UniRef90_UPI00164B83C5	nucleoid-associated protein	NA
UHGV-2000463_36	eggNOG-mapper	411490.ANACAC_00791	37-kD nucleoid-associated bacterial protein	NA
UHGV-2000463_36	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-2000463_36	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-2000463_36	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA