UHGV-2001020

Genome information

Genome length 43,212 bps

CDS count 54

Completeness 98.02% (high-quality)

geNomad score 0.9636

Prediction confidence Confident

Genome information
Genome ID	UHGV-2001020
vOTU ID	vOTU-008105
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023718\|Ga0257036_10304\|provirus_3_43214
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9636
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.82
Jumbo phage	No

Genome content
Genome length	43,212 bps
GC content	39.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.36%
Average CDS length	741.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2001020_1	eggNOG-mapper	391596.PBAL39_11302	self proteolysis	NA
UHGV-2001020_1	COG	COG3209	NA	NA
UHGV-2001020_2	UniRef90	UniRef90_A0A096AHK6	Ig-like domain-containing protein	NA
UHGV-2001020_2	eggNOG-mapper	873533.HMPREF0663_11604	NA	NA
UHGV-2001020_3	eggNOG-mapper	866771.HMPREF9296_2497	NA	NA
UHGV-2001020_3	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2001020_4	KOfam	K16308	CIT; citron Rho-interacting kinase [EC:2.7.11.1]	NA
UHGV-2001020_4	PHROG	phrog_26804	NA	unknown function
UHGV-2001020_4	UniRef90	UniRef90_A0A316R717	Phage tail tape measure protein	NA
UHGV-2001020_4	eggNOG-mapper	553171.HMPREF0648_0693	nuclear chromosome segregation	NA
UHGV-2001020_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2001020_4	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2001020_5	eggNOG-mapper	619693.HMPREF6745_0806	NA	NA
UHGV-2001020_6	UniRef90	UniRef90_A0A3D2M1B1	5-formyltetrahydrofolate cyclo-ligase	NA
UHGV-2001020_6	Structural annotation	PF12990	NA	NA
UHGV-2001020_8	eggNOG-mapper	483216.BACEGG_00548	NA	NA
UHGV-2001020_10	eggNOG-mapper	1349822.NSB1T_10510	NA	NA
UHGV-2001020_11	PHROG	phrog_9788	NA	unknown function
UHGV-2001020_11	UniRef90	UniRef90_A0A412BNU5	PIN_8 domain-containing protein	NA
UHGV-2001020_11	eggNOG-mapper	714943.Mucpa_5672	B-1 B cell differentiation	NA
UHGV-2001020_11	Pfam	PF18476	PIN like domain	PIN_8
UHGV-2001020_11	COG	COG4249	NA	NA
UHGV-2001020_12	PHROG	phrog_8999	NA	unknown function
UHGV-2001020_12	UniRef90	UniRef90_UPI001F44DE34	putative phage abortive infection protein	NA
UHGV-2001020_12	eggNOG-mapper	1408813.AYMG01000001_gene3450	Putative phage abortive infection protein	NA
UHGV-2001020_12	Pfam	PF16872	Putative phage abortive infection protein	putAbiC
UHGV-2001020_12	Structural annotation	PF16872	NA	NA
UHGV-2001020_13	UniRef90	UniRef90_UPI000E1E1302	NA	NA
UHGV-2001020_13	eggNOG-mapper	1268240.ATFI01000008_gene2327	NA	NA
UHGV-2001020_13	Pfam	PF16476	NA	DUF5053
UHGV-2001020_13	Structural annotation	PF16476	NA	NA
UHGV-2001020_14	Structural annotation	NF040877	NA	NA
UHGV-2001020_15	eggNOG-mapper	1077285.AGDG01000027_gene1851	NA	NA
UHGV-2001020_16	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2001020_16	UniRef90	UniRef90_A0A3D2M1W0	Amidoligase enzyme	NA
UHGV-2001020_16	eggNOG-mapper	862515.HMPREF0658_1287	Putative amidoligase enzyme	NA
UHGV-2001020_16	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2001020_16	Structural annotation	PF12224, MF_01609, NF010041, COG2170	NA	NA
UHGV-2001020_17	UniRef90	UniRef90_UPI000E1D51EF	SH3 domain-containing protein	NA
UHGV-2001020_18	eggNOG-mapper	411476.BACOVA_02552	NA	NA
UHGV-2001020_19	PHROG	phrog_35356	NA	unknown function
UHGV-2001020_19	UniRef90	UniRef90_A0A412BNT8	Histidine kinase	NA
UHGV-2001020_19	eggNOG-mapper	411476.BACOVA_03952	NA	NA
UHGV-2001020_20	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2001020_20	PHROG	phrog_822	amidase	lysis
UHGV-2001020_20	UniRef90	UniRef90_A0A412G9U4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2001020_20	eggNOG-mapper	657309.BXY_05110	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2001020_20	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2001020_20	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2001020_20	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-2001020_21	PHROG	phrog_32423	NA	unknown function
UHGV-2001020_21	eggNOG-mapper	657309.BXY_05120	NA	NA
UHGV-2001020_22	Structural annotation	PF09646	NA	NA
UHGV-2001020_24	Structural annotation	PF20459	NA	NA
UHGV-2001020_25	PHROG	phrog_22277	NA	unknown function
UHGV-2001020_25	eggNOG-mapper	888743.HMPREF9141_0443	NA	NA
UHGV-2001020_25	Structural annotation	PF07230, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-2001020_26	Structural annotation	PF08863	NA	NA
UHGV-2001020_27	eggNOG-mapper	563008.HMPREF0665_02344	NA	NA
UHGV-2001020_27	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2001020_29	Structural annotation	PF13022	NA	NA
UHGV-2001020_30	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2001020_30	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2001020_30	UniRef90	UniRef90_A0A3D2M192	Methyltransferase	NA
UHGV-2001020_30	eggNOG-mapper	679191.HMPREF9018_0930	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2001020_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2001020_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2001020_30	COG	COG0863	DNA modification methylase	NA
UHGV-2001020_30	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2001020_33	eggNOG-mapper	619693.HMPREF6745_0830	NA	NA
UHGV-2001020_33	Structural annotation	PF07316, TIGR02126, COG5437	NA	NA
UHGV-2001020_34	PHROG	phrog_21862	NA	unknown function
UHGV-2001020_34	eggNOG-mapper	563008.HMPREF0665_02351	NA	NA
UHGV-2001020_34	Structural annotation	PF05065, MF_04119, TIGR01551, COG4653	NA	NA
UHGV-2001020_35	KOfam	K04773	sppA; protease IV [EC:3.4.21.-]	NA
UHGV-2001020_35	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-2001020_35	UniRef90	UniRef90_A0A3D2LYC8	Peptidase	NA
UHGV-2001020_35	eggNOG-mapper	862515.HMPREF0658_1306	Peptidase, S49 (Protease IV) family protein	NA
UHGV-2001020_35	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-2001020_35	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-2001020_35	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-2001020_36	Structural annotation	PF12945, COG5437	NA	NA
UHGV-2001020_37	eggNOG-mapper	862515.HMPREF0658_1308	NA	NA
UHGV-2001020_38	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2001020_38	PHROG	phrog_6444	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2001020_38	UniRef90	UniRef90_A0A3D2M0V8	DNA primase	NA
UHGV-2001020_38	eggNOG-mapper	619693.HMPREF6745_0835	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-2001020_38	PADLOC	drt-UG29	DRT	DRT
UHGV-2001020_38	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2001020_38	Pfam	PF08275	DNA primase catalytic core, N-terminal domain	DNAG_N
UHGV-2001020_38	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2001020_38	Pfam	PF10410	DnaB-helicase binding domain of primase	DnaB_bind
UHGV-2001020_38	NCBIFam	TIGR01391.1	DNA primase	NA
UHGV-2001020_38	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2001020_38	HAMAP	MF_00974	DNA primase [dnaG]	NA
UHGV-2001020_38	Structural annotation	PF01807, PF08275, PF06048, PF13155, PF21650, MF_00974, MF_01625, TIGR01391, TIGR02031, COG0358, COG5519	NA	NA
UHGV-2001020_39	UniRef90	UniRef90_A0A3D2LZL2	XRE family transcriptional regulator	NA
UHGV-2001020_39	eggNOG-mapper	563008.HMPREF0665_02356	NA	NA
UHGV-2001020_39	Structural annotation	PF13560, NF041677	NA	NA
UHGV-2001020_43	PHROG	phrog_8581	NA	unknown function
UHGV-2001020_43	eggNOG-mapper	862515.HMPREF0658_1309	NA	NA
UHGV-2001020_48	eggNOG-mapper	483216.BACEGG_00550	NA	NA
UHGV-2001020_50	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-2001020_50	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-2001020_50	UniRef90	UniRef90_A0A3D2M1T4	RNA polymerase subunit sigma	NA
UHGV-2001020_50	eggNOG-mapper	483215.BACFIN_07180	Belongs to the sigma-70 factor family. ECF subfamily	NA
UHGV-2001020_50	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2001020_50	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2001020_50	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2001020_50	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2001020_50	Structural annotation	PF08281, PF04542, MF_00962, NF008890, COG1595	NA	NA
UHGV-2001020_52	KOfam	K02479	K02479; two-component system, NarL family, response regulator	NA
UHGV-2001020_52	PHROG	phrog_10300	transcriptional regulator	transcription regulation
UHGV-2001020_52	UniRef90	UniRef90_A0A3D2LZK2	LuxR family transcriptional regulator	NA
UHGV-2001020_52	eggNOG-mapper	411479.BACUNI_02665	transcriptional regulator, LuxR family	NA
UHGV-2001020_52	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2001020_52	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2001020_52	Structural annotation	PF00196, MF_00674, NF011940, COG2771	NA	NA
UHGV-2001020_53	UniRef90	UniRef90_A0A3D2M173	Transcriptional regulator	NA
UHGV-2001020_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2001020_54	UniRef90	UniRef90_A0A4Q0J971	XRE family transcriptional regulator	NA
UHGV-2001020_54	eggNOG-mapper	1349822.NSB1T_12435	NA	NA
UHGV-2001020_54	Structural annotation	PF20432, NF007257, COG1396	NA	NA