UHGV-2001687

Genome information

Genome length 36,659 bps

CDS count 59

Completeness 81.12% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-2001687
vOTU ID	vOTU-015878
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023502\|Ga0257054_100255\|provirus_47501_84159
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.5
Jumbo phage	No

Genome content
Genome length	36,659 bps
GC content	44.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.81%
Average CDS length	575.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2001687_1	UniRef90	UniRef90_A0A1C6L0N4	HTH cro/C1-type domain-containing protein	NA
UHGV-2001687_1	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-2001687_4	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-2001687_4	PHROG	phrog_19349	NA	unknown function
UHGV-2001687_4	UniRef90	UniRef90_D7GXC0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	NA
UHGV-2001687_4	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-2001687_4	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2001687_4	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2001687_4	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-2001687_6	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-2001687_6	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-2001687_6	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-2001687_6	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-2001687_7	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-2001687_7	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2001687_7	UniRef90	UniRef90_D7GXC3	DNA or RNA helicases of superfamily II	NA
UHGV-2001687_7	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-2001687_7	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-2001687_7	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2001687_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2001687_7	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2001687_7	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-2001687_8	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2001687_8	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-2001687_8	eggNOG-mapper	397290.C810_01484	NA	NA
UHGV-2001687_9	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2001687_9	UniRef90	UniRef90_D7GXC4	DNA polymerase elongation subunit (Family B)	NA
UHGV-2001687_9	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-2001687_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-2001687_9	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-2001687_9	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-2001687_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2001687_10	UniRef90	UniRef90_D7GXC5	Phage-related protein, predicted endonuclease	NA
UHGV-2001687_10	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-2001687_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2001687_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2001687_10	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-2001687_13	Structural annotation	PF05037	NA	NA
UHGV-2001687_14	PHROG	phrog_236	nucleotide kinase	other
UHGV-2001687_14	UniRef90	UniRef90_UPI001D04CE99	NA	NA
UHGV-2001687_14	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-2001687_14	Pfam	PF11753	NA	DUF3310
UHGV-2001687_14	Structural annotation	PF11753	NA	NA
UHGV-2001687_15	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-2001687_15	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2001687_15	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2001687_15	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2001687_15	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2001687_15	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-2001687_16	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-2001687_16	PHROG	phrog_5889	NA	unknown function
UHGV-2001687_16	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-2001687_16	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-2001687_16	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-2001687_16	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-2001687_18	PHROG	phrog_6721	NA	unknown function
UHGV-2001687_18	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-2001687_18	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2001687_21	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-2001687_22	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2001687_22	UniRef90	UniRef90_A0A1C0AE21	DNA primase	NA
UHGV-2001687_22	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-2001687_22	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-2001687_22	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-2001687_22	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-2001687_24	PHROG	phrog_21980	NA	unknown function
UHGV-2001687_24	UniRef90	UniRef90_D7GNU5	NA	NA
UHGV-2001687_24	eggNOG-mapper	1235800.C819_00506	NA	NA
UHGV-2001687_24	Pfam	PF19789	NA	DUF6273
UHGV-2001687_24	Structural annotation	PF19789	NA	NA
UHGV-2001687_26	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2001687_26	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-2001687_26	UniRef90	UniRef90_A0A1C5MWG4	mRNA interferase MazF4	NA
UHGV-2001687_26	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-2001687_26	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2001687_26	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2001687_26	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2001687_27	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2001687_27	UniRef90	UniRef90_D7GNU9	Phage/plasmid primase, P4 family, C-terminal domain	NA
UHGV-2001687_27	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-2001687_27	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2001687_27	Pfam	PF19263	NA	DUF5906
UHGV-2001687_27	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2001687_27	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2001687_27	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2001687_27	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-2001687_29	eggNOG-mapper	665950.HMPREF1025_01402	NA	NA
UHGV-2001687_34	PHROG	phrog_1233	NA	unknown function
UHGV-2001687_34	UniRef90	UniRef90_UPI00082AC4A5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2001687_34	Structural annotation	PF06114	NA	NA
UHGV-2001687_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2001687_35	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2001687_37	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2001687_37	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2001687_37	UniRef90	UniRef90_A0A3R6IIF9	PAPS_reduct domain-containing protein	NA
UHGV-2001687_37	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2001687_37	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2001687_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2001687_37	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-2001687_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2001687_38	UniRef90	UniRef90_A0A7X3MFG0	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2001687_38	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-2001687_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2001687_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2001687_38	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-2001687_40	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-2001687_42	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2001687_42	eggNOG-mapper	1519439.JPJG01000044_gene958	NA	NA
UHGV-2001687_43	UniRef90	UniRef90_D7GNV4	Helix-turn-helix	NA
UHGV-2001687_43	eggNOG-mapper	1235800.C819_01469	NA	NA
UHGV-2001687_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2001687_43	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-2001687_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2001687_44	PHROG	phrog_95	integrase	integration and excision
UHGV-2001687_44	UniRef90	UniRef90_A0A1C5MXG4	Transposon Tn3 resolvase	NA
UHGV-2001687_44	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-2001687_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2001687_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-2001687_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2001687_44	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2001687_45	Structural annotation	PF19569, COG3427	NA	NA
UHGV-2001687_46	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2001687_46	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-2001687_46	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-2001687_46	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2001687_46	COG	COG5410	NA	NA
UHGV-2001687_46	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2001687_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-2001687_47	UniRef90	UniRef90_A0A1C5MXM2	Phage portal protein, SPP1 family	NA
UHGV-2001687_47	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2001687_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2001687_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2001687_49	PHROG	phrog_544	major head protein	head and packaging
UHGV-2001687_49	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-2001687_49	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-2001687_49	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2001687_50	UniRef90	UniRef90_D7GNV9	Phage QLRG family, putative DNA packaging	NA
UHGV-2001687_50	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-2001687_50	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2001687_50	Structural annotation	TIGR01560	NA	NA
UHGV-2001687_51	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-2001687_52	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-2001687_53	eggNOG-mapper	469596.HMPREF9488_01309	NA	NA
UHGV-2001687_53	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2001687_54	PHROG	phrog_158	major tail protein	tail
UHGV-2001687_54	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-2001687_54	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-2001687_54	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2001687_55	UniRef90	UniRef90_A0A1C0ADY7	NA	NA
UHGV-2001687_55	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-2001687_55	Pfam	PF16478	NA	DUF5055
UHGV-2001687_55	Structural annotation	PF16478	NA	NA
UHGV-2001687_56	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-2001687_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2001687_57	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-2001687_57	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-2001687_57	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2001687_58	PHROG	phrog_1194	NA	unknown function
UHGV-2001687_58	UniRef90	UniRef90_R6RCL6	Gp18	NA
UHGV-2001687_58	eggNOG-mapper	1158612.I580_01922	NA	NA
UHGV-2001687_58	Pfam	PF20458	NA	DUF6711
UHGV-2001687_58	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2001687_59	PHROG	phrog_6616	tail protein	tail
UHGV-2001687_59	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA