UHGV-2002128

Genome information

Genome length 22,345 bps

CDS count 32

Completeness 55.91% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-2002128
vOTU ID	vOTU-022200
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023499\|Ga0257052_100113\|provirus_193_22537
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.24
Jumbo phage	No

Genome content
Genome length	22,345 bps
GC content	48.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	95.49%
Average CDS length	669.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2002128_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2002128_1	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2002128_1	UniRef90	UniRef90_UPI000C7A7EA3	terminase small subunit	NA
UHGV-2002128_1	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-2002128_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2002128_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2002128_2	PHROG	phrog_10250	NA	unknown function
UHGV-2002128_2	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-2002128_2	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-2002128_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2002128_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2002128_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-2002128_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2002128_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-2002128_4	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-2002128_4	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-2002128_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2002128_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2002128_5	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-2002128_5	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-2002128_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2002128_5	COG	COG2369	NA	NA
UHGV-2002128_5	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2002128_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2002128_7	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-2002128_7	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2002128_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2002128_7	Structural annotation	PF06810	NA	NA
UHGV-2002128_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-2002128_8	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2002128_8	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2002128_8	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2002128_9	Pfam	PF13912	C2H2-type zinc finger	zf-C2H2_6
UHGV-2002128_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2002128_10	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2002128_11	PHROG	phrog_3366	NA	unknown function
UHGV-2002128_11	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2002128_11	Pfam	PF20536	NA	DUF6751
UHGV-2002128_11	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2002128_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2002128_12	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-2002128_12	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2002128_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2002128_12	Structural annotation	PF11114	NA	NA
UHGV-2002128_13	PHROG	phrog_3266	tail completion	connector
UHGV-2002128_13	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-2002128_13	Structural annotation	PF20765	NA	NA
UHGV-2002128_14	PHROG	phrog_3099	NA	unknown function
UHGV-2002128_14	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-2002128_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2002128_15	PHROG	phrog_11299	NA	unknown function
UHGV-2002128_15	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-2002128_15	Structural annotation	PF10666	NA	NA
UHGV-2002128_16	PHROG	phrog_706	NA	unknown function
UHGV-2002128_16	UniRef90	UniRef90_UPI00051C36A4	Gp15 family bacteriophage protein	NA
UHGV-2002128_16	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-2002128_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2002128_16	Structural annotation	PF06854	NA	NA
UHGV-2002128_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2002128_17	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2002128_17	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-2002128_17	COG	COG1511	NA	NA
UHGV-2002128_17	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-2002128_18	PHROG	phrog_1194	NA	unknown function
UHGV-2002128_18	eggNOG-mapper	1211844.CBLM010000023_gene979	NA	NA
UHGV-2002128_18	Pfam	PF20458	NA	DUF6711
UHGV-2002128_18	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2002128_19	PHROG	phrog_6616	tail protein	tail
UHGV-2002128_19	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-2002128_19	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2002128_21	Structural annotation	PF10651, NF009453	NA	NA
UHGV-2002128_22	Structural annotation	PF02973	NA	NA
UHGV-2002128_24	PHROG	phrog_27545	NA	unknown function
UHGV-2002128_24	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-2002128_24	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2002128_24	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2002128_25	PHROG	phrog_1863	NA	unknown function
UHGV-2002128_25	eggNOG-mapper	1291050.JAGE01000001_gene2942	NA	NA
UHGV-2002128_26	PHROG	phrog_608	holin	lysis
UHGV-2002128_26	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-2002128_26	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-2002128_26	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-2002128_27	PHROG	phrog_15956	tail assembly protein	tail
UHGV-2002128_27	UniRef90	UniRef90_A0A644YJG6	NlpC/P60 domain-containing protein	NA
UHGV-2002128_27	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-2002128_27	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2002128_27	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2002128_27	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-2002128_28	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2002128_28	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-2002128_28	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2002128_28	Pfam	PF14359	NA	DUF4406
UHGV-2002128_28	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2002128_30	KOfam	K03778	ldhA; D-lactate dehydrogenase [EC:1.1.1.28]	NA
UHGV-2002128_30	PHROG	phrog_26092	NA	unknown function
UHGV-2002128_30	UniRef90	UniRef90_R6I8H0	4-phosphoerythronate dehydrogenase	NA
UHGV-2002128_30	eggNOG-mapper	411463.EUBVEN_01915	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family	NA
UHGV-2002128_30	Pfam	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	2-Hacid_dh_C
UHGV-2002128_30	COG	COG1052	Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase	NA