UHGV-2003355

Genome information

Genome length 36,063 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-2003355
vOTU ID	vOTU-014325
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029040\|Ga0169694_100183\|provirus_12575_48637
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.41
Jumbo phage	No

Genome content
Genome length	36,063 bps
GC content	44.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.73%
Average CDS length	480.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2003355_1	KOfam	K02346	dinB; DNA polymerase IV [EC:2.7.7.7]	NA
UHGV-2003355_1	PHROG	phrog_1268	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2003355_1	UniRef90	UniRef90_A7VY60	DNA polymerase IV	NA
UHGV-2003355_1	eggNOG-mapper	428125.CLOLEP_00589	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	NA
UHGV-2003355_1	Pfam	PF00817	impB/mucB/samB family	IMS
UHGV-2003355_1	Pfam	PF11799	impB/mucB/samB family C-terminal domain	IMS_C
UHGV-2003355_1	NCBIFam	NF002677.0	DNA polymerase IV	NA
UHGV-2003355_1	COG	COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	NA
UHGV-2003355_1	HAMAP	MF_01113	DNA polymerase IV [dinB]	NA
UHGV-2003355_1	Structural annotation	PF00817, PF11799, PF21704, MF_01113, NF002848, COG0389	NA	NA
UHGV-2003355_3	PHROG	phrog_13890	NA	unknown function
UHGV-2003355_3	UniRef90	UniRef90_A0A1C6F5F6	Arc domain-containing protein	NA
UHGV-2003355_3	eggNOG-mapper	742738.HMPREF9460_00716	NA	NA
UHGV-2003355_3	Pfam	PF05534	HicB family	HicB
UHGV-2003355_3	Structural annotation	PF10723, NF010256	NA	NA
UHGV-2003355_6	PHROG	phrog_297	holin	lysis
UHGV-2003355_6	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-2003355_6	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-2003355_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2003355_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2003355_6	COG	COG5546	NA	NA
UHGV-2003355_6	Structural annotation	COG5546	NA	NA
UHGV-2003355_7	PHROG	phrog_1863	NA	unknown function
UHGV-2003355_7	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-2003355_7	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-2003355_8	KOfam	K07273	acm; lysozyme	NA
UHGV-2003355_8	PHROG	phrog_291	endolysin	lysis
UHGV-2003355_8	UniRef90	UniRef90_A0A1C5NS63	Autolytic lysozyme	NA
UHGV-2003355_8	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-2003355_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2003355_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2003355_8	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-2003355_9	PHROG	phrog_7121	tail fiber protein	tail
UHGV-2003355_9	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-2003355_9	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-2003355_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2003355_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2003355_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2003355_10	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-2003355_10	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2003355_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2003355_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2003355_10	COG	COG4926	Phage-related protein	NA
UHGV-2003355_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2003355_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2003355_11	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-2003355_11	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2003355_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-2003355_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2003355_12	PHROG	phrog_23464	NA	unknown function
UHGV-2003355_12	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-2003355_12	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-2003355_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2003355_12	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-2003355_13	PHROG	phrog_3033	NA	unknown function
UHGV-2003355_13	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-2003355_14	PHROG	phrog_709	NA	unknown function
UHGV-2003355_14	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-2003355_14	Structural annotation	PF11836	NA	NA
UHGV-2003355_15	PHROG	phrog_88	major tail protein	tail
UHGV-2003355_15	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-2003355_15	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-2003355_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2003355_15	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-2003355_16	PHROG	phrog_78	tail terminator	connector
UHGV-2003355_16	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-2003355_16	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-2003355_16	Structural annotation	PF20765	NA	NA
UHGV-2003355_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2003355_17	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-2003355_17	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-2003355_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2003355_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2003355_18	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2003355_18	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-2003355_18	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-2003355_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2003355_19	PHROG	phrog_2550	NA	unknown function
UHGV-2003355_19	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-2003355_19	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-2003355_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2003355_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-2003355_20	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2003355_20	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-2003355_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2003355_20	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2003355_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2003355_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2003355_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2003355_21	KOfam	K06904	NA	NA
UHGV-2003355_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2003355_21	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-2003355_21	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-2003355_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2003355_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2003355_21	COG	COG3740	Phage head maturation protease	NA
UHGV-2003355_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2003355_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-2003355_22	UniRef90	UniRef90_A0A1C6H763	Phage portal protein, HK97 family	NA
UHGV-2003355_22	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-2003355_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2003355_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2003355_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2003355_22	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2003355_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2003355_23	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-2003355_23	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-2003355_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2003355_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2003355_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2003355_23	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2003355_24	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2003355_24	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-2003355_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2003355_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2003355_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2003355_28	Structural annotation	PF09274, NF041284, COG4877	NA	NA
UHGV-2003355_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2003355_29	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-2003355_29	eggNOG-mapper	883112.HMPREF9707_01621	NA	NA
UHGV-2003355_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2003355_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2003355_34	UniRef90	UniRef90_A0A412AV74	NA	NA
UHGV-2003355_34	Pfam	PF04448	NA	DUF551
UHGV-2003355_40	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2003355_40	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-2003355_43	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2003355_43	UniRef90	UniRef90_A0A6M3L5L0	Putative methyltransferase	NA
UHGV-2003355_43	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-2003355_43	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2003355_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2003355_46	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2003355_46	UniRef90	UniRef90_A0A1C6HG31	Holliday junction resolvase	NA
UHGV-2003355_46	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-2003355_46	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2003355_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2003355_46	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2003355_47	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2003355_47	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2003355_47	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-2003355_47	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-2003355_47	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2003355_47	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2003355_47	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-2003355_48	PHROG	phrog_16304	NA	unknown function
UHGV-2003355_48	UniRef90	UniRef90_A0A1C6HII5	NA	NA
UHGV-2003355_48	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-2003355_48	Pfam	PF19808	NA	DUF6291
UHGV-2003355_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2003355_49	PHROG	phrog_2113	NA	unknown function
UHGV-2003355_49	UniRef90	UniRef90_A0A3A6EZF7	HTH domain-containing protein	NA
UHGV-2003355_49	Structural annotation	PF21715	NA	NA
UHGV-2003355_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2003355_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2003355_50	UniRef90	UniRef90_A7VPP2	Single-stranded DNA-binding protein	NA
UHGV-2003355_50	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-2003355_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2003355_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2003355_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2003355_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2003355_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2003355_51	PHROG	phrog_7566	NA	unknown function
UHGV-2003355_51	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-2003355_51	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-2003355_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2003355_52	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2003355_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2003355_52	Structural annotation	PF05772	NA	NA
UHGV-2003355_53	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2003355_53	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-2003355_53	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-2003355_53	Pfam	PF06378	NA	DUF1071
UHGV-2003355_53	Structural annotation	PF06378, COG4712	NA	NA
UHGV-2003355_59	PHROG	phrog_4392	NA	unknown function
UHGV-2003355_59	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-2003355_60	PHROG	phrog_750	NA	unknown function
UHGV-2003355_60	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-2003355_63	UniRef90	UniRef90_A0A0D8IY67	HTH cro/C1-type domain-containing protein	NA
UHGV-2003355_63	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-2003355_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2003355_63	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-2003355_64	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2003355_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2003355_64	UniRef90	UniRef90_UPI0019565CF8	helix-turn-helix transcriptional regulator	NA
UHGV-2003355_64	eggNOG-mapper	1504823.CCMM01000008_gene1055	sequence-specific DNA binding	NA
UHGV-2003355_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2003355_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2003355_64	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-2003355_66	PHROG	phrog_17572	NA	unknown function
UHGV-2003355_66	UniRef90	UniRef90_A0A0H4LIJ8	Prophage ps2 protein 03	NA
UHGV-2003355_66	eggNOG-mapper	1499683.CCFF01000017_gene3026	NA	NA
UHGV-2003355_66	Structural annotation	PF13783, MF_01122	NA	NA
UHGV-2003355_68	KOfam	K14059	int; integrase	NA
UHGV-2003355_68	PHROG	phrog_1	integrase	integration and excision
UHGV-2003355_68	UniRef90	UniRef90_A0A1C6FNS1	Integrase	NA
UHGV-2003355_68	eggNOG-mapper	428125.CLOLEP_01837	Belongs to the 'phage' integrase family	NA
UHGV-2003355_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2003355_68	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2003355_68	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA