UHGV-2003713

Genome information

Genome length 38,335 bps

CDS count 48

Completeness 98.45% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-2003713
vOTU ID	vOTU-066726
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029002\|Ga0169634_100283\|provirus_5093_43427
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.45% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.86
Jumbo phage	No

Genome content
Genome length	38,335 bps
GC content	38.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.53%
Average CDS length	748.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2003713_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2003713_2	PHROG	phrog_894	endolysin	lysis
UHGV-2003713_2	UniRef90	UniRef90_E1LBK8	Peptidase M15	NA
UHGV-2003713_2	eggNOG-mapper	868595.Desca_1639	Peptidase M15A	NA
UHGV-2003713_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2003713_2	COG	COG3108	NA	NA
UHGV-2003713_2	Structural annotation	PF08291, COG3108	NA	NA
UHGV-2003713_3	PHROG	phrog_199	holin	lysis
UHGV-2003713_3	UniRef90	UniRef90_X8H951	Holin family protein	NA
UHGV-2003713_3	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-2003713_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2003713_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2003713_4	PHROG	phrog_22483	NA	unknown function
UHGV-2003713_4	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-2003713_4	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-2003713_4	Structural annotation	PF17936, COG2372	NA	NA
UHGV-2003713_6	PHROG	phrog_1101	tail protein	tail
UHGV-2003713_6	UniRef90	UniRef90_A0A660M257	Phage-tail_3 domain-containing protein (Fragment)	NA
UHGV-2003713_6	eggNOG-mapper	706434.HMPREF9429_00513	domain protein	NA
UHGV-2003713_6	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-2003713_6	COG	COG1511	NA	NA
UHGV-2003713_6	Structural annotation	PF13550, PF05895, NF040662, TIGR03503, COG4733	NA	NA
UHGV-2003713_7	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-2003713_7	PHROG	phrog_329	minor tail protein	tail
UHGV-2003713_7	UniRef90	UniRef90_W1VEK1	NlpC/P60 domain-containing protein	NA
UHGV-2003713_7	eggNOG-mapper	706434.HMPREF9429_00514	cysteine-type peptidase activity	NA
UHGV-2003713_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2003713_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2003713_7	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-2003713_8	PHROG	phrog_778	tail assembly protein	tail
UHGV-2003713_8	UniRef90	UniRef90_X8H8N4	TIGR02218 family protein	NA
UHGV-2003713_8	eggNOG-mapper	706434.HMPREF9429_00515	NA	NA
UHGV-2003713_8	Pfam	PF09931	NA	DUF2163
UHGV-2003713_8	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-2003713_8	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-2003713_8	COG	COG5449	NA	NA
UHGV-2003713_8	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-2003713_9	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-2003713_9	UniRef90	UniRef90_X8H6S9	PF09343 family protein	NA
UHGV-2003713_9	eggNOG-mapper	706434.HMPREF9429_00516	NA	NA
UHGV-2003713_9	Pfam	PF09343	NA	DUF2460
UHGV-2003713_9	COG	COG5448	NA	NA
UHGV-2003713_9	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-2003713_10	PHROG	phrog_12798	NA	unknown function
UHGV-2003713_10	UniRef90	UniRef90_W1V9U8	Tape measure protein	NA
UHGV-2003713_10	eggNOG-mapper	706434.HMPREF9429_00517	tape measure	NA
UHGV-2003713_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2003713_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2003713_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2003713_10	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-2003713_11	PHROG	phrog_7377	NA	unknown function
UHGV-2003713_11	eggNOG-mapper	1123288.SOV_2c03530	NA	NA
UHGV-2003713_12	eggNOG-mapper	1232428.CAVO010000021_gene798	NA	NA
UHGV-2003713_12	Structural annotation	PF19591	NA	NA
UHGV-2003713_13	PHROG	phrog_1407	major tail protein	tail
UHGV-2003713_13	UniRef90	UniRef90_X8H8Q2	Phage major tail protein, TP901-1 family	NA
UHGV-2003713_13	eggNOG-mapper	706434.HMPREF9429_00520	Phage tail tube protein	NA
UHGV-2003713_13	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2003713_13	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2003713_13	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-2003713_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2003713_14	PHROG	phrog_18864	NA	unknown function
UHGV-2003713_14	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-2003713_14	Structural annotation	PF06141, COG5003	NA	NA
UHGV-2003713_15	PHROG	phrog_19017	NA	unknown function
UHGV-2003713_15	eggNOG-mapper	706434.HMPREF9429_00522	NA	NA
UHGV-2003713_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2003713_16	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-2003713_16	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-2003713_16	COG	COG5005	NA	NA
UHGV-2003713_16	Structural annotation	TIGR01725	NA	NA
UHGV-2003713_17	PHROG	phrog_15682	NA	unknown function
UHGV-2003713_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-2003713_18	UniRef90	UniRef90_UPI001C2F3899	phage capsid protein	NA
UHGV-2003713_18	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-2003713_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2003713_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2003713_19	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-2003713_19	eggNOG-mapper	1123489.AUAN01000010_gene360	NA	NA
UHGV-2003713_19	Structural annotation	PF06810	NA	NA
UHGV-2003713_20	PHROG	phrog_1865	NA	unknown function
UHGV-2003713_20	Structural annotation	PF07073, MF_00436, TIGR02383, COG1923	NA	NA
UHGV-2003713_21	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-2003713_21	UniRef90	UniRef90_W1VC85	Ntox50 domain-containing protein	NA
UHGV-2003713_21	eggNOG-mapper	706434.HMPREF9429_00528	NA	NA
UHGV-2003713_21	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-2003713_22	PHROG	phrog_145	portal protein	head and packaging
UHGV-2003713_22	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-2003713_22	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-2003713_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2003713_23	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-2003713_23	UniRef90	UniRef90_A0A660M2Z0	Terminase	NA
UHGV-2003713_23	eggNOG-mapper	1123489.AUAN01000010_gene364	TIGRFAM Phage	NA
UHGV-2003713_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2003713_23	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2003713_23	COG	COG5410	NA	NA
UHGV-2003713_23	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2003713_24	Structural annotation	PF07141	NA	NA
UHGV-2003713_25	PHROG	phrog_1558	NA	unknown function
UHGV-2003713_25	UniRef90	UniRef90_UPI000BB98A80	sigma-70 region 4 domain-containing protein	NA
UHGV-2003713_25	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-2003713_25	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-2003713_26	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2003713_26	UniRef90	UniRef90_A0A134C0X6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2003713_26	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2003713_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2003713_26	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2003713_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2003713_27	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2003713_27	UniRef90	UniRef90_A0A096BYG4	DNA replication protein DnaC	NA
UHGV-2003713_27	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-2003713_27	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2003713_27	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2003713_27	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-2003713_28	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2003713_28	UniRef90	UniRef90_D6KLE8	NA	NA
UHGV-2003713_28	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-2003713_28	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2003713_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2003713_28	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-2003713_29	PHROG	phrog_29533	NA	unknown function
UHGV-2003713_30	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2003713_30	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2003713_30	UniRef90	UniRef90_W1V8U0	Lactamase_B domain-containing protein	NA
UHGV-2003713_30	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-2003713_30	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2003713_30	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2003713_30	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2003713_31	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2003713_31	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2003713_31	UniRef90	UniRef90_A0A811GJA5	Protein RecT	NA
UHGV-2003713_31	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-2003713_31	Pfam	PF03837	RecT family	RecT
UHGV-2003713_31	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2003713_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2003713_31	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2003713_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2003713_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2003713_32	UniRef90	UniRef90_F5KZL5	BRO family, N-terminal domain protein	NA
UHGV-2003713_32	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-2003713_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2003713_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2003713_32	COG	COG3617	Prophage antirepressor	NA
UHGV-2003713_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2003713_33	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2003713_33	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2003713_33	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-2003713_33	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-2003713_33	Pfam	PF13476	AAA domain	AAA_23
UHGV-2003713_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2003713_33	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2003713_34	PHROG	phrog_16315	NA	unknown function
UHGV-2003713_34	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-2003713_34	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-2003713_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2003713_34	Structural annotation	PF14284	NA	NA
UHGV-2003713_35	PHROG	phrog_29844	NA	unknown function
UHGV-2003713_36	PHROG	phrog_35266	NA	unknown function
UHGV-2003713_36	UniRef90	UniRef90_UPI001A614D00	choline-binding protein A	NA
UHGV-2003713_37	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-2003713_40	PHROG	phrog_29542	NA	unknown function
UHGV-2003713_41	PHROG	phrog_6058	NA	unknown function
UHGV-2003713_41	Structural annotation	PF09035, NF033787	NA	NA
UHGV-2003713_42	UniRef90	UniRef90_X8H7K4	Cro/C1-type HTH DNA-binding domain protein	NA
UHGV-2003713_42	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-2003713_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2003713_42	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2003713_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2003713_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2003713_43	UniRef90	UniRef90_X8H8X8	DNA-binding helix-turn-helix protein	NA
UHGV-2003713_43	eggNOG-mapper	479436.Vpar_0382	Helix-turn-helix domain protein	NA
UHGV-2003713_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2003713_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2003713_43	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2003713_44	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-2003713_44	PHROG	phrog_8036	NA	unknown function
UHGV-2003713_44	UniRef90	UniRef90_S2ZR71	Bro-N domain-containing protein	NA
UHGV-2003713_44	eggNOG-mapper	936589.HMPREF1521_1176	NA	NA
UHGV-2003713_44	AcrCatalog	cluster_17589	NA	NA
UHGV-2003713_44	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-2003713_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2003713_44	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-2003713_44	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2003713_44	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-2003713_45	PHROG	phrog_20936	NA	unknown function
UHGV-2003713_45	UniRef90	UniRef90_W1V9S8	Peptidase_M78 domain-containing protein	NA
UHGV-2003713_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2003713_45	Structural annotation	PF06114	NA	NA
UHGV-2003713_46	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2003713_46	UniRef90	UniRef90_A0A6N2ZUD5	Abi-like protein	NA
UHGV-2003713_46	eggNOG-mapper	568816.Acin_1264	Abi-like protein	NA
UHGV-2003713_46	PADLOC	AbiD	AbiD	Abi
UHGV-2003713_46	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2003713_46	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2003713_46	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2003713_47	KOfam	K14059	int; integrase	NA
UHGV-2003713_47	PHROG	phrog_1	integrase	integration and excision
UHGV-2003713_47	UniRef90	UniRef90_A0A096CR61	Tyr recombinase domain-containing protein	NA
UHGV-2003713_47	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-2003713_47	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2003713_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2003713_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2003713_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2003713_48	KOfam	K05524	fdxA; ferredoxin	NA
UHGV-2003713_48	UniRef90	UniRef90_W1YE22	Ferredoxin (Fragment)	NA
UHGV-2003713_48	eggNOG-mapper	546273.VEIDISOL_00789	Ferredoxin	NA
UHGV-2003713_48	Pfam	PF00037	4Fe-4S binding domain	Fer4
UHGV-2003713_48	Pfam	PF12837	4Fe-4S binding domain	Fer4_6
UHGV-2003713_48	COG	COG2221	Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits	NA