UHGV-2005581

Genome information

Genome length 41,458 bps

CDS count 55

Completeness 89.02% (medium-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-2005581
vOTU ID	vOTU-022644
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029007\|Ga0169678_100156\|provirus_3_41460
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.67
Jumbo phage	No

Genome content
Genome length	41,458 bps
GC content	41.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.10%
Average CDS length	666.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2005581_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2005581_1	PHROG	phrog_435	endolysin	lysis
UHGV-2005581_1	UniRef90	UniRef90_A0A2N5NRG3	MurNAc-LAA domain-containing protein	NA
UHGV-2005581_1	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-2005581_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2005581_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2005581_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2005581_3	PHROG	phrog_10091	holin	lysis
UHGV-2005581_3	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-2005581_3	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-2005581_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2005581_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2005581_3	COG	COG5546	NA	NA
UHGV-2005581_3	Structural annotation	COG5546	NA	NA
UHGV-2005581_4	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-2005581_5	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2005581_5	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2005581_5	UniRef90	UniRef90_UPI00156EB2FA	collagen-like protein	NA
UHGV-2005581_5	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-2005581_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2005581_5	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-2005581_6	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2005581_6	UniRef90	UniRef90_UPI001186E767	phage tail family protein	NA
UHGV-2005581_6	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-2005581_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2005581_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2005581_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-2005581_6	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2005581_7	PHROG	phrog_5218	NA	unknown function
UHGV-2005581_7	UniRef90	UniRef90_UPI00156ED04E	phage tail tape measure protein	NA
UHGV-2005581_7	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-2005581_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2005581_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2005581_7	COG	COG4487	NA	NA
UHGV-2005581_7	Structural annotation	PF10145, TIGR01760, NF011901	NA	NA
UHGV-2005581_10	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-2005581_10	UniRef90	UniRef90_UPI00156D6AA7	Rha family transcriptional regulator	NA
UHGV-2005581_10	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2005581_10	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2005581_10	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2005581_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2005581_10	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2005581_11	PHROG	phrog_6329	NA	unknown function
UHGV-2005581_11	UniRef90	UniRef90_A0A3Q9BAR3	Phage infection protein	NA
UHGV-2005581_11	eggNOG-mapper	552525.B5LPL4_9CAUD	NA	NA
UHGV-2005581_12	PHROG	phrog_3896	NA	unknown function
UHGV-2005581_13	PHROG	phrog_888	NA	unknown function
UHGV-2005581_13	UniRef90	UniRef90_A0A7Y9A5V2	SHOCT domain-containing protein	NA
UHGV-2005581_13	eggNOG-mapper	290402.Cbei_1346	NA	NA
UHGV-2005581_13	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-2005581_14	PHROG	phrog_23726	NA	unknown function
UHGV-2005581_14	eggNOG-mapper	293826.Amet_2441	cell wall binding repeat	NA
UHGV-2005581_14	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-2005581_15	UniRef90	UniRef90_UPI00156F727A	helix-turn-helix transcriptional regulator	NA
UHGV-2005581_15	eggNOG-mapper	537007.BLAHAN_06453	sequence-specific DNA binding	NA
UHGV-2005581_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2005581_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2005581_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2005581_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2005581_16	UniRef90	UniRef90_UPI00156E0ED4	helix-turn-helix domain-containing protein	NA
UHGV-2005581_16	eggNOG-mapper	500632.CLONEX_03573	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2005581_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2005581_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2005581_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2005581_19	PHROG	phrog_29609	NA	unknown function
UHGV-2005581_19	UniRef90	UniRef90_A0A1C5UN80	PBECR2 domain-containing protein	NA
UHGV-2005581_19	eggNOG-mapper	1280698.AUJS01000041_gene2531	NA	NA
UHGV-2005581_19	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2005581_19	Structural annotation	PF18825, COG2929	NA	NA
UHGV-2005581_20	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2005581_20	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-2005581_20	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-2005581_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2005581_20	COG	COG3617	Prophage antirepressor	NA
UHGV-2005581_20	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-2005581_21	PHROG	phrog_706	NA	unknown function
UHGV-2005581_21	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-2005581_21	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-2005581_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2005581_21	Structural annotation	PF06854	NA	NA
UHGV-2005581_22	PHROG	phrog_4450	NA	unknown function
UHGV-2005581_22	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-2005581_22	Pfam	PF20378	NA	DUF6673
UHGV-2005581_22	Structural annotation	PF20378	NA	NA
UHGV-2005581_23	PHROG	phrog_3099	NA	unknown function
UHGV-2005581_23	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-2005581_23	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-2005581_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2005581_24	PHROG	phrog_3266	tail completion	connector
UHGV-2005581_24	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-2005581_24	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-2005581_24	Structural annotation	PF12691	NA	NA
UHGV-2005581_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2005581_25	UniRef90	UniRef90_UPI000E48DD75	minor capsid protein	NA
UHGV-2005581_25	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-2005581_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2005581_25	Structural annotation	PF11114	NA	NA
UHGV-2005581_26	PHROG	phrog_3366	NA	unknown function
UHGV-2005581_26	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-2005581_26	Pfam	PF20536	NA	DUF6751
UHGV-2005581_26	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2005581_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2005581_27	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-2005581_28	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-2005581_28	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-2005581_28	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2005581_28	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2005581_29	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2005581_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2005581_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2005581_30	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-2005581_30	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-2005581_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2005581_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2005581_32	UniRef90	UniRef90_UPI000E4FFED9	phage minor capsid protein	NA
UHGV-2005581_32	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-2005581_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2005581_32	COG	COG2369	NA	NA
UHGV-2005581_32	Structural annotation	PF06152	NA	NA
UHGV-2005581_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-2005581_33	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-2005581_33	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-2005581_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2005581_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2005581_34	PHROG	phrog_10250	NA	unknown function
UHGV-2005581_34	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-2005581_34	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-2005581_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2005581_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2005581_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2005581_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2005581_35	PHROG	phrog_2412	NA	unknown function
UHGV-2005581_35	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-2005581_35	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-2005581_37	eggNOG-mapper	553973.CLOHYLEM_05570	NA	NA
UHGV-2005581_38	Structural annotation	PF15968	NA	NA
UHGV-2005581_39	PHROG	phrog_10865	NA	unknown function
UHGV-2005581_39	eggNOG-mapper	1506994.JNLQ01000002_gene584	NA	NA
UHGV-2005581_39	Pfam	PF20505	NA	DUF6731
UHGV-2005581_39	Structural annotation	PF20505, NF001463	NA	NA
UHGV-2005581_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2005581_40	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-2005581_40	Structural annotation	PF02996	NA	NA
UHGV-2005581_45	PHROG	phrog_8684	NA	unknown function
UHGV-2005581_45	UniRef90	UniRef90_A0A855H8M3	YopX domain-containing protein	NA
UHGV-2005581_45	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-2005581_45	Pfam	PF09643	YopX protein	YopX
UHGV-2005581_45	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2005581_45	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2005581_47	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2005581_47	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2005581_47	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2005581_47	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2005581_48	KOfam	K07497	K07497; putative transposase	NA
UHGV-2005581_48	PHROG	phrog_310	transposase	integration and excision
UHGV-2005581_48	UniRef90	UniRef90_A0A829NIA8	Integrase catalytic domain-containing protein	NA
UHGV-2005581_48	eggNOG-mapper	500632.CLONEX_01333	PFAM Integrase catalytic	NA
UHGV-2005581_48	Pfam	PF13565	Homeodomain-like domain	HTH_32
UHGV-2005581_48	Pfam	PF00665	Integrase core domain	rve
UHGV-2005581_48	Pfam	PF13683	Integrase core domain	rve_3
UHGV-2005581_48	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2005581_48	Structural annotation	PF00665, PF13565, NF033594, COG4584	NA	NA
UHGV-2005581_49	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-2005581_49	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2005581_49	UniRef90	UniRef90_A0A396FJU3	AAA domain-containing protein	NA
UHGV-2005581_49	eggNOG-mapper	500632.CLONEX_01334	AAA domain	NA
UHGV-2005581_49	Pfam	PF13401	AAA domain	AAA_22
UHGV-2005581_49	COG	COG3267	Type II secretory pathway ATPase component GspA/ExeA/MshM	NA
UHGV-2005581_49	Structural annotation	PF05621, PF20436, MF_01407, TIGR03015, COG3267	NA	NA
UHGV-2005581_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2005581_50	PHROG	phrog_95	integrase	integration and excision
UHGV-2005581_50	UniRef90	UniRef90_A0A374E0N2	Recombinase family protein	NA
UHGV-2005581_50	eggNOG-mapper	457412.RSAG_00291	Resolvase, N-terminal domain protein	NA
UHGV-2005581_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2005581_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-2005581_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2005581_51	AcrCatalog	cluster_162806	NA	NA
UHGV-2005581_52	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2005581_52	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-2005581_52	UniRef90	UniRef90_A0A143XCX4	mRNA interferase EndoA	NA
UHGV-2005581_52	eggNOG-mapper	397290.C810_03773	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-2005581_52	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2005581_52	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2005581_52	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2005581_53	UniRef90	UniRef90_A0A316AEA2	RNA polymerase sigma-70 factor (ECF subfamily)	NA
UHGV-2005581_53	eggNOG-mapper	1280698.AUJS01000098_gene1146	Sigma-70, region 4	NA
UHGV-2005581_53	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2005581_53	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2005581_54	UniRef90	UniRef90_A0A3E4K5X3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2005581_54	eggNOG-mapper	1280698.AUJS01000030_gene1928	Sigma-70, region 4	NA
UHGV-2005581_54	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2005581_54	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2005581_54	Structural annotation	PF04545, MF_00245, TIGR02989, COG2739	NA	NA
UHGV-2005581_55	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2005581_55	UniRef90	UniRef90_A0A6N2Z8X3	HTH-type transcriptional regulator ImmR	NA
UHGV-2005581_55	eggNOG-mapper	1280698.AUJS01000030_gene1929	Helix-turn-helix domain	NA
UHGV-2005581_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2005581_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2005581_55	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA