UHGV-2005907

Genome information

Genome length 33,122 bps

CDS count 54

Completeness 88.66% (medium-quality)

geNomad score 0.9600

Prediction confidence Confident

Genome information
Genome ID	UHGV-2005907
vOTU ID	vOTU-026673
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300028971\|Ga0169751_100308\|provirus_3_33124
BioSample	SAMEA2580163
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9600
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.45
Jumbo phage	No

Genome content
Genome length	33,122 bps
GC content	34.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.94%
Average CDS length	574.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2005907_1	PHROG	phrog_13289	tail protein	tail
UHGV-2005907_1	UniRef90	UniRef90_A0A412AXS9	Peptidase S74 domain-containing protein	NA
UHGV-2005907_1	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-2005907_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2005907_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2005907_1	COG	COG4926	Phage-related protein	NA
UHGV-2005907_1	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2005907_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2005907_2	UniRef90	UniRef90_A0A412AXU0	Phage tail protein	NA
UHGV-2005907_2	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-2005907_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-2005907_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2005907_3	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-2005907_3	UniRef90	UniRef90_UPI001CF926D4	phage tail tape measure protein	NA
UHGV-2005907_3	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-2005907_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2005907_3	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2005907_4	PHROG	phrog_7423	NA	unknown function
UHGV-2005907_4	UniRef90	UniRef90_A0A7Z8ZWF9	NA	NA
UHGV-2005907_4	eggNOG-mapper	1235792.C808_05347	NA	NA
UHGV-2005907_5	eggNOG-mapper	1235792.C808_05346	NA	NA
UHGV-2005907_6	PHROG	phrog_1407	major tail protein	tail
UHGV-2005907_6	UniRef90	UniRef90_A0A1Y4R6T8	Phage major tail protein, TP901-1 family	NA
UHGV-2005907_6	eggNOG-mapper	1235792.C808_05345	Phage tail tube protein	NA
UHGV-2005907_6	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2005907_6	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2005907_6	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-2005907_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2005907_7	PHROG	phrog_176	tail terminator	connector
UHGV-2005907_7	UniRef90	UniRef90_UPI00085C86AC	NA	NA
UHGV-2005907_7	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-2005907_7	Pfam	PF16807	NA	DUF5072
UHGV-2005907_7	Structural annotation	PF16807, COG5003	NA	NA
UHGV-2005907_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2005907_8	UniRef90	UniRef90_A0A412AXL7	HK97 gp10 family phage protein	NA
UHGV-2005907_8	eggNOG-mapper	742722.HMPREF9463_00249	NA	NA
UHGV-2005907_8	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2005907_9	PHROG	phrog_793	head-tail adaptor	connector
UHGV-2005907_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2005907_10	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2005907_10	UniRef90	UniRef90_UPI00110715F1	phage head-tail connector protein	NA
UHGV-2005907_10	eggNOG-mapper	1235792.C808_05341	NA	NA
UHGV-2005907_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2005907_10	Structural annotation	PF05135	NA	NA
UHGV-2005907_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-2005907_11	UniRef90	UniRef90_A0A1M6RG13	S-l_SbsC_C domain-containing protein	NA
UHGV-2005907_11	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2005907_11	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2005907_12	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2005907_12	UniRef90	UniRef90_UPI000BE8EE50	NA	NA
UHGV-2005907_12	eggNOG-mapper	1347392.CCEZ01000005_gene1235	NA	NA
UHGV-2005907_12	Pfam	PF14265	NA	DUF4355
UHGV-2005907_12	Structural annotation	PF14265	NA	NA
UHGV-2005907_13	KOfam	K07584	NA	NA
UHGV-2005907_13	PHROG	phrog_4478	peptidase	other
UHGV-2005907_13	UniRef90	UniRef90_UPI001CF84C18	ribosomal-processing cysteine protease Prp	NA
UHGV-2005907_13	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2005907_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2005907_13	COG	COG2868	NA	NA
UHGV-2005907_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2005907_14	KOfam	K03671	trxA; thioredoxin 1	NA
UHGV-2005907_14	UniRef90	UniRef90_A0A1Y4R928	Thioredoxin domain-containing protein	NA
UHGV-2005907_14	eggNOG-mapper	37682.EMT04831	Thioredoxin-like domain	NA
UHGV-2005907_14	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-2005907_14	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-2005907_14	Structural annotation	PF00085, MF_01835, TIGR01068, COG0526	NA	NA
UHGV-2005907_16	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2005907_16	UniRef90	UniRef90_UPI00189CA103	minor capsid protein	NA
UHGV-2005907_16	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-2005907_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2005907_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2005907_16	COG	COG2369	NA	NA
UHGV-2005907_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2005907_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-2005907_17	UniRef90	UniRef90_UPI001961C69C	phage portal protein	NA
UHGV-2005907_17	eggNOG-mapper	476272.RUMHYD_02846	Phage portal protein, SPP1 family	NA
UHGV-2005907_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2005907_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2005907_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2005907_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2005907_18	PHROG	phrog_10250	NA	unknown function
UHGV-2005907_18	UniRef90	UniRef90_A0A1Y4R608	Terminase	NA
UHGV-2005907_18	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-2005907_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2005907_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2005907_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2005907_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-2005907_18	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2005907_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2005907_19	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2005907_19	UniRef90	UniRef90_A8RC03	Terminase small subunit	NA
UHGV-2005907_19	eggNOG-mapper	428127.EUBDOL_01230	terminase (Small subunit)	NA
UHGV-2005907_19	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2005907_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2005907_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2005907_19	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2005907_20	Structural annotation	PF05263, MF_00245, TIGR01636	NA	NA
UHGV-2005907_26	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-2005907_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2005907_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2005907_27	UniRef90	UniRef90_A8RC14	Single-stranded DNA-binding protein	NA
UHGV-2005907_27	eggNOG-mapper	428127.EUBDOL_01239	Single-stranded DNA-binding protein	NA
UHGV-2005907_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2005907_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2005907_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2005907_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2005907_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2005907_28	UniRef90	UniRef90_A0A318KPZ6	E2/UBC family protein D	NA
UHGV-2005907_28	Pfam	PF14460	Prokaryotic E2 family D	Prok-E2_D
UHGV-2005907_28	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-2005907_30	KOfam	K03148	thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]	NA
UHGV-2005907_30	UniRef90	UniRef90_A8RC17	ThiF family protein	NA
UHGV-2005907_30	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-2005907_30	Pfam	PF00899	ThiF family	ThiF
UHGV-2005907_30	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-2005907_30	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-2005907_32	Structural annotation	PF02768, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-2005907_33	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2005907_33	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2005907_33	UniRef90	UniRef90_A8RC21	DnaD domain protein	NA
UHGV-2005907_33	eggNOG-mapper	428127.EUBDOL_01245	DnaD domain protein	NA
UHGV-2005907_33	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2005907_33	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2005907_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2005907_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2005907_34	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-2005907_34	Pfam	PF05772	NinB protein	NinB
UHGV-2005907_34	Structural annotation	PF05772	NA	NA
UHGV-2005907_35	PHROG	phrog_7566	NA	unknown function
UHGV-2005907_35	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-2005907_36	PHROG	phrog_14970	NA	unknown function
UHGV-2005907_36	UniRef90	UniRef90_UPI00046EF232	Rad52/Rad22 family DNA repair protein	NA
UHGV-2005907_36	eggNOG-mapper	428127.EUBDOL_01248	double-strand break repair protein	NA
UHGV-2005907_36	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-2005907_36	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2005907_36	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2005907_37	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2005907_37	UniRef90	UniRef90_A8RC26	PDDEXK_1 domain-containing protein	NA
UHGV-2005907_37	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-2005907_37	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-2005907_37	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-2005907_39	PHROG	phrog_2113	NA	unknown function
UHGV-2005907_39	UniRef90	UniRef90_A0A3D5XTI7	HTH_11 domain-containing protein	NA
UHGV-2005907_40	PHROG	phrog_22529	NA	unknown function
UHGV-2005907_40	UniRef90	UniRef90_A8RC30	3D domain protein	NA
UHGV-2005907_40	eggNOG-mapper	457412.RSAG_01849	3D domain	NA
UHGV-2005907_40	Pfam	PF06725	3D domain	3D
UHGV-2005907_40	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2005907_43	UniRef90	UniRef90_UPI000C83CF54	helix-turn-helix domain-containing protein	NA
UHGV-2005907_44	UniRef90	UniRef90_A8RC41	DNA-binding helix-turn-helix protein	NA
UHGV-2005907_44	eggNOG-mapper	565653.EGBG_01589	Helix-turn-helix XRE-family like proteins	NA
UHGV-2005907_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2005907_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2005907_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2005907_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2005907_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2005907_45	UniRef90	UniRef90_UPI0005C76E12	helix-turn-helix domain-containing protein	NA
UHGV-2005907_45	eggNOG-mapper	768706.Desor_5395	PFAM Helix-turn-helix	NA
UHGV-2005907_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2005907_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2005907_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2005907_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2005907_46	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2005907_46	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-2005907_46	Pfam	PF02037	SAP domain	SAP
UHGV-2005907_46	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2005907_46	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2005907_46	COG	COG2369	NA	NA
UHGV-2005907_47	PHROG	phrog_3364	NA	unknown function
UHGV-2005907_47	UniRef90	UniRef90_A0A5C8CIR6	ATP-binding protein	NA
UHGV-2005907_47	eggNOG-mapper	552396.HMPREF0863_02847	NA	NA
UHGV-2005907_47	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172	NA	NA
UHGV-2005907_48	UniRef90	UniRef90_A0A316NP98	NA	NA
UHGV-2005907_48	eggNOG-mapper	552396.HMPREF0863_02848	NA	NA
UHGV-2005907_48	Pfam	PF14213	NA	DUF4325
UHGV-2005907_48	Structural annotation	PF14213	NA	NA
UHGV-2005907_51	PHROG	phrog_87	metallo-protease	other
UHGV-2005907_51	UniRef90	UniRef90_A8RC45	Peptidase_M78 domain-containing protein	NA
UHGV-2005907_51	eggNOG-mapper	1121422.AUMW01000021_gene1669	NA	NA
UHGV-2005907_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2005907_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2005907_52	KOfam	K14059	int; integrase	NA
UHGV-2005907_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2005907_52	UniRef90	UniRef90_A8RC46	Site-specific recombinase, phage integrase family	NA
UHGV-2005907_52	eggNOG-mapper	428127.EUBDOL_01266	Belongs to the 'phage' integrase family	NA
UHGV-2005907_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2005907_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2005907_52	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2005907_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2005907_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2005907_53	UniRef90	UniRef90_A8RC47	Single-stranded DNA-binding protein	NA
UHGV-2005907_53	eggNOG-mapper	428127.EUBDOL_01267	Single-stranded DNA-binding protein	NA
UHGV-2005907_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2005907_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2005907_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2005907_54	KOfam	K07263	pqqL; zinc protease [EC:3.4.24.-]	NA
UHGV-2005907_54	UniRef90	UniRef90_A8RC48	Peptidase, M16 family	NA
UHGV-2005907_54	eggNOG-mapper	428127.EUBDOL_01268	NA	NA
UHGV-2005907_54	Pfam	PF00675	Insulinase (Peptidase family M16)	Peptidase_M16
UHGV-2005907_54	Pfam	PF05193	Peptidase M16 inactive domain	Peptidase_M16_C
UHGV-2005907_54	COG	COG0612	Predicted Zn-dependent peptidase, M16 family	NA