UHGV-2006231

Genome information

vOTU vOTU-019947

Genome length 29,175 bps

CDS count 46

Completeness 76.55% (medium-quality)

geNomad score 0.9238

Prediction confidence Confident

Genome information
Genome ID	UHGV-2006231
vOTU ID	vOTU-019947
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029050\|Ga0169629_100549\|provirus_3226_37337
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9238
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.29
Jumbo phage	No

Genome content
Genome length	29,175 bps
GC content	29.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.24%
Average CDS length	594.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2006231_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2006231_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2006231_1	UniRef90	UniRef90_A0A1T4XIY8	Site-specific DNA recombinase	NA
UHGV-2006231_1	eggNOG-mapper	86416.Clopa_0310	resolvase	NA
UHGV-2006231_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2006231_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2006231_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2006231_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2006231_1	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-2006231_2	UniRef90	UniRef90_UPI001C1042B8	helix-turn-helix domain-containing protein	NA
UHGV-2006231_2	eggNOG-mapper	1499683.CCFF01000014_gene3570	Helix-turn-helix XRE-family like proteins	NA
UHGV-2006231_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2006231_3	UniRef90	UniRef90_A0A1T5KEM5	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2006231_3	eggNOG-mapper	293826.Amet_2612	Helix-turn-helix XRE-family like proteins	NA
UHGV-2006231_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2006231_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2006231_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2006231_4	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2006231_4	UniRef90	UniRef90_A0A1S8TVH0	HTH cro/C1-type domain-containing protein	NA
UHGV-2006231_4	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-2006231_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2006231_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2006231_4	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-2006231_11	eggNOG-mapper	1304284.L21TH_0487	NA	NA
UHGV-2006231_12	eggNOG-mapper	1540257.JQMW01000009_gene2678	cell division	NA
UHGV-2006231_12	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-2006231_13	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-2006231_13	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-2006231_13	UniRef90	UniRef90_UPI000BE38D7F	ParM/StbA family protein	NA
UHGV-2006231_13	eggNOG-mapper	1280689.AUJC01000011_gene1499	cell division	NA
UHGV-2006231_13	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-2006231_15	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2006231_16	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2006231_16	eggNOG-mapper	1151292.QEW_4383	NA	NA
UHGV-2006231_16	Structural annotation	PF08679, MF_01819, TIGR01889, COG5625	NA	NA
UHGV-2006231_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2006231_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2006231_17	UniRef90	UniRef90_S6ELL9	Replicative DNA helicase	NA
UHGV-2006231_17	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-2006231_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2006231_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2006231_17	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2006231_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-2006231_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2006231_18	Structural annotation	NF033495	NA	NA
UHGV-2006231_21	eggNOG-mapper	1414720.CBYM010000017_gene3115	EXOIII	NA
UHGV-2006231_21	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2006231_23	Pfam	PF13113	NA	DUF3970
UHGV-2006231_23	Structural annotation	PF13113, NF008362, COG3978	NA	NA
UHGV-2006231_24	UniRef90	UniRef90_A0A1C6L9R5	HTH dtxR-type domain-containing protein	NA
UHGV-2006231_24	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2006231_25	eggNOG-mapper	1280689.AUJC01000011_gene1510	NA	NA
UHGV-2006231_25	Pfam	PF07374	NA	DUF1492
UHGV-2006231_26	PHROG	phrog_9628	NA	unknown function
UHGV-2006231_26	UniRef90	UniRef90_UPI0016490A48	DNA-binding response regulator	NA
UHGV-2006231_26	eggNOG-mapper	86416.Clopa_0331	NA	NA
UHGV-2006231_26	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2006231_26	Structural annotation	PF06056, COG2771	NA	NA
UHGV-2006231_27	PHROG	phrog_15827	NA	unknown function
UHGV-2006231_27	UniRef90	UniRef90_A0A3P6JPY1	Zn-finger containing protein	NA
UHGV-2006231_27	eggNOG-mapper	1280689.AUJC01000011_gene1511	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-2006231_27	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-2006231_27	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-2006231_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2006231_28	PHROG	phrog_216	integrase	integration and excision
UHGV-2006231_28	UniRef90	UniRef90_A0A1I7G3C4	Phage integrase family protein	NA
UHGV-2006231_28	eggNOG-mapper	1211817.CCAT010000007_gene1044	integrase family	NA
UHGV-2006231_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2006231_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2006231_29	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2006231_29	UniRef90	UniRef90_A0A316MA76	Transposase	NA
UHGV-2006231_29	eggNOG-mapper	457396.CSBG_01043	transposase activity	NA
UHGV-2006231_29	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2006231_29	Structural annotation	PF07141	NA	NA
UHGV-2006231_31	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-2006231_31	UniRef90	UniRef90_A0A1C6JI31	HNH endonuclease	NA
UHGV-2006231_31	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-2006231_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2006231_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2006231_31	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-2006231_32	PHROG	phrog_1066	NA	unknown function
UHGV-2006231_32	UniRef90	UniRef90_UPI001E5C7227	zinc-binding protein	NA
UHGV-2006231_32	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-2006231_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2006231_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2006231_33	UniRef90	UniRef90_A0A316ME49	Terminase	NA
UHGV-2006231_33	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-2006231_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2006231_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2006231_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2006231_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2006231_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-2006231_34	UniRef90	UniRef90_A0A316MSJ3	Portal protein	NA
UHGV-2006231_34	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-2006231_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2006231_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2006231_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2006231_35	KOfam	K06904	NA	NA
UHGV-2006231_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2006231_35	UniRef90	UniRef90_A0A1C6JHX3	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2006231_35	eggNOG-mapper	457396.CSBG_01049	Phage major capsid protein, HK97 family	NA
UHGV-2006231_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2006231_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2006231_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2006231_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2006231_36	UniRef90	UniRef90_UPI00157576BA	phage gp6-like head-tail connector protein	NA
UHGV-2006231_36	eggNOG-mapper	457396.CSBG_01050	NA	NA
UHGV-2006231_37	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2006231_37	UniRef90	UniRef90_UPI00071736EE	phage head closure protein	NA
UHGV-2006231_37	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-2006231_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2006231_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2006231_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2006231_38	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-2006231_38	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-2006231_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2006231_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2006231_38	Structural annotation	TIGR01725	NA	NA
UHGV-2006231_39	PHROG	phrog_957	head protein	head and packaging
UHGV-2006231_39	eggNOG-mapper	457396.CSBG_01053	NA	NA
UHGV-2006231_39	Structural annotation	PF11367, COG4722	NA	NA
UHGV-2006231_40	PHROG	phrog_885	major tail protein	tail
UHGV-2006231_40	UniRef90	UniRef90_UPI00149126AB	Ig-like domain-containing protein	NA
UHGV-2006231_40	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-2006231_40	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-2006231_40	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2006231_41	PHROG	phrog_1021	NA	unknown function
UHGV-2006231_41	eggNOG-mapper	457396.CSBG_01055	NA	NA
UHGV-2006231_43	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-2006231_43	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2006231_43	eggNOG-mapper	642492.Clole_1867	Phage tail tape measure protein TP901	NA
UHGV-2006231_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2006231_43	Pfam	PF02987	Late embryogenesis abundant protein	LEA_4
UHGV-2006231_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2006231_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2006231_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2006231_44	UniRef90	UniRef90_A0A174QR32	Tail component family protein	NA
UHGV-2006231_44	eggNOG-mapper	1499683.CCFF01000017_gene2156	tail component	NA
UHGV-2006231_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2006231_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2006231_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-2006231_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2006231_45	PHROG	phrog_7043	tail protein	tail
UHGV-2006231_45	UniRef90	UniRef90_UPI0018996BD4	phage tail protein	NA
UHGV-2006231_45	eggNOG-mapper	1499683.CCFF01000005_gene80	Phage minor structural protein	NA
UHGV-2006231_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2006231_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2006231_45	COG	COG4926	Phage-related protein	NA
UHGV-2006231_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA