UHGV-2006740

Genome information

vOTU vOTU-019065

Genome length 7,430 bps

CDS count 13

Completeness 65.60% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-2006740
vOTU ID	vOTU-019065
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023494\|Ga0257057_100808\|provirus_12070_25128
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.56
Jumbo phage	No

Genome content
Genome length	7,430 bps
GC content	37.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	13
CDS density	77.50%
Average CDS length	444.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2006740_1	KOfam	K14059	int; integrase	NA
UHGV-2006740_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2006740_1	UniRef90	UniRef90_A0A4D5ZTK7	Integrase	NA
UHGV-2006740_1	eggNOG-mapper	322159.STER_0829	Belongs to the 'phage' integrase family	NA
UHGV-2006740_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2006740_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2006740_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2006740_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2006740_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2006740_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2006740_2	UniRef90	UniRef90_A0A8A3U0I8	Helix-turn-helix transcriptional regulator	NA
UHGV-2006740_2	eggNOG-mapper	1214217.ALNF01000036_gene1700	transcriptional	NA
UHGV-2006740_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2006740_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2006740_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2006740_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2006740_3	UniRef90	UniRef90_G6ER46	Transcriptional regulator, Cro/CI family	NA
UHGV-2006740_3	eggNOG-mapper	764291.STRUR_2167	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2006740_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2006740_3	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2006740_4	UniRef90	UniRef90_A0A3S5E149	Cytosolic protein	NA
UHGV-2006740_5	UniRef90	UniRef90_A0A509DLQ2	NA	NA
UHGV-2006740_7	PHROG	phrog_2113	NA	unknown function
UHGV-2006740_7	UniRef90	UniRef90_A0A3S4QFL9	Phage related protein	NA
UHGV-2006740_7	eggNOG-mapper	1035187.HMPREF9959_1399	NA	NA
UHGV-2006740_7	Structural annotation	PF11994, MF_01177, TIGR02944, COG1959	NA	NA
UHGV-2006740_8	PHROG	phrog_10458	NA	unknown function
UHGV-2006740_8	UniRef90	UniRef90_A0A0E2Q1M6	HTH merR-type domain-containing protein	NA
UHGV-2006740_8	eggNOG-mapper	768726.HMPREF9178_1171	NA	NA
UHGV-2006740_8	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-2006740_8	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-2006740_9	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-2006740_9	UniRef90	UniRef90_A0A4D5ZSA8	PriCT_1 domain-containing protein	NA
UHGV-2006740_9	eggNOG-mapper	322159.STER_0820	Phage plasmid primase P4 family	NA
UHGV-2006740_9	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-2006740_9	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2006740_9	Structural annotation	PF08708, NF040562	NA	NA
UHGV-2006740_10	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2006740_10	UniRef90	UniRef90_E8KT61	Virulence-associated protein E	NA
UHGV-2006740_10	eggNOG-mapper	220668.lp_2473	Virulence-associated protein E	NA
UHGV-2006740_10	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2006740_10	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2006740_10	Structural annotation	PF05272, NF005477, COG5545	NA	NA
UHGV-2006740_12	UniRef90	UniRef90_A0A2X3WIY8	NA	NA
UHGV-2006740_12	eggNOG-mapper	1035187.HMPREF9959_1395	NA	NA
UHGV-2006740_12	Structural annotation	PF04175, MF_00659, NF007435, COG3691	NA	NA
UHGV-2006740_13	PHROG	phrog_2133	NA	unknown function
UHGV-2006740_13	UniRef90	UniRef90_A0A4D5ZSJ9	Paratox	NA