UHGV-2008458

Genome information

Genome length 29,328 bps

CDS count 49

Completeness 81.82% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-2008458
vOTU ID	vOTU-032881
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029001\|Ga0169658_100142\|provirus_20459_49786
BioSample	SAMEA2580077
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.72
Jumbo phage	No

Genome content
Genome length	29,328 bps
GC content	42.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.48%
Average CDS length	546.12 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2008458_2	UniRef90	UniRef90_A0A7G5N0Z9	XRE family transcriptional regulator	NA
UHGV-2008458_2	eggNOG-mapper	1196322.A370_04524	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2008458_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2008458_2	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-2008458_4	eggNOG-mapper	1235799.C818_04214	NA	NA
UHGV-2008458_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2008458_5	PHROG	phrog_435	endolysin	lysis
UHGV-2008458_5	UniRef90	UniRef90_A0A7G5N101	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2008458_5	eggNOG-mapper	33035.JPJF01000090_gene96	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2008458_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2008458_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2008458_5	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-2008458_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2008458_5	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-2008458_6	PHROG	phrog_1129	holin	lysis
UHGV-2008458_6	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-2008458_6	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2008458_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2008458_6	Structural annotation	PF16079	NA	NA
UHGV-2008458_7	UniRef90	UniRef90_A0A7G5N3U9	Branched-chain amino acid ABC transporter permease	NA
UHGV-2008458_7	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-2008458_8	COG	COG4675	Phage tail collar domain	NA
UHGV-2008458_8	Structural annotation	PF09458, NF012201	NA	NA
UHGV-2008458_10	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-2008458_10	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-2008458_11	PHROG	phrog_32322	NA	unknown function
UHGV-2008458_11	UniRef90	UniRef90_A0A7G5N107	Ig-like_bact domain-containing protein	NA
UHGV-2008458_11	eggNOG-mapper	33035.JPJF01000023_gene3226	NA	NA
UHGV-2008458_11	Pfam	PF13754	NA	Big_3_4
UHGV-2008458_11	Structural annotation	PF13754	NA	NA
UHGV-2008458_12	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-2008458_12	PHROG	phrog_11157	NA	unknown function
UHGV-2008458_12	UniRef90	UniRef90_A0A7G5N108	Big_13 domain-containing protein	NA
UHGV-2008458_12	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-2008458_12	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2008458_12	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-2008458_12	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2008458_12	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2008458_13	PHROG	phrog_19280	NA	unknown function
UHGV-2008458_13	eggNOG-mapper	33035.JPJF01000023_gene3228	NA	NA
UHGV-2008458_13	Structural annotation	PF10651, TIGR02781	NA	NA
UHGV-2008458_14	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2008458_14	PHROG	phrog_11037	NA	unknown function
UHGV-2008458_14	UniRef90	UniRef90_A0A7G5N110	Peptidase M23	NA
UHGV-2008458_14	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-2008458_14	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2008458_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2008458_14	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-2008458_15	PHROG	phrog_13289	tail protein	tail
UHGV-2008458_15	UniRef90	UniRef90_A0A7G5N111	Prophage_tail domain-containing protein	NA
UHGV-2008458_15	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-2008458_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2008458_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2008458_15	COG	COG4926	Phage-related protein	NA
UHGV-2008458_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2008458_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2008458_16	UniRef90	UniRef90_UPI00164B9B8B	phage tail family protein	NA
UHGV-2008458_16	eggNOG-mapper	33035.JPJF01000023_gene3231	phage tail	NA
UHGV-2008458_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2008458_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2008458_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-2008458_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2008458_17	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2008458_17	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-2008458_17	UniRef90	UniRef90_A0A7G5N113	Phage tail tape measure protein	NA
UHGV-2008458_17	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-2008458_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2008458_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2008458_17	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2008458_19	PHROG	phrog_88	major tail protein	tail
UHGV-2008458_19	UniRef90	UniRef90_A0A7G5N115	Phage tail protein	NA
UHGV-2008458_19	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-2008458_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2008458_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2008458_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2008458_20	UniRef90	UniRef90_R7FK52	Phage protein HK97 gp10 family	NA
UHGV-2008458_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2008458_20	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2008458_21	Structural annotation	PF05657	NA	NA
UHGV-2008458_22	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-2008458_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2008458_23	PHROG	phrog_749	NA	unknown function
UHGV-2008458_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-2008458_24	UniRef90	UniRef90_A0A7G5N120	Phage major capsid protein	NA
UHGV-2008458_24	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-2008458_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2008458_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2008458_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2008458_24	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-2008458_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2008458_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2008458_25	UniRef90	UniRef90_A0A8G1WTD6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2008458_25	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-2008458_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2008458_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2008458_25	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2008458_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-2008458_26	UniRef90	UniRef90_A0A7G5N122	Phage portal protein	NA
UHGV-2008458_26	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-2008458_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2008458_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2008458_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2008458_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2008458_27	UniRef90	UniRef90_A0A7G5N123	Terminase large subunit	NA
UHGV-2008458_27	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-2008458_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2008458_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2008458_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2008458_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2008458_28	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2008458_28	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-2008458_28	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-2008458_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2008458_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2008458_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2008458_30	UniRef90	UniRef90_A0A7G5N126	HNH endonuclease	NA
UHGV-2008458_30	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-2008458_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2008458_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2008458_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2008458_31	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-2008458_31	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-2008458_31	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2008458_33	PHROG	phrog_301	secreted protein	other
UHGV-2008458_33	UniRef90	UniRef90_UPI001F258ED3	NA	NA
UHGV-2008458_33	eggNOG-mapper	329726.AM1_4741	NA	NA
UHGV-2008458_35	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2008458_35	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2008458_35	UniRef90	UniRef90_A0A7G5N132	DNA adenine methylase	NA
UHGV-2008458_35	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2008458_35	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2008458_35	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2008458_35	COG	COG0338	DNA-adenine methylase	NA
UHGV-2008458_37	PHROG	phrog_13489	NA	unknown function
UHGV-2008458_37	eggNOG-mapper	1158601.I585_01174	NA	NA
UHGV-2008458_39	UniRef90	UniRef90_A0A1B1YKR6	Ribonuclease H	NA
UHGV-2008458_39	eggNOG-mapper	1121335.Clst_1422	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2008458_39	COG	COG0328	Ribonuclease HI	NA
UHGV-2008458_39	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2008458_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2008458_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2008458_40	UniRef90	UniRef90_A0A7G5N136	Single-stranded DNA-binding protein	NA
UHGV-2008458_40	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-2008458_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2008458_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2008458_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2008458_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2008458_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2008458_41	UniRef90	UniRef90_A0A7G5N137	Response regulator transcription factor	NA
UHGV-2008458_42	PHROG	phrog_7566	NA	unknown function
UHGV-2008458_42	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-2008458_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2008458_43	eggNOG-mapper	33035.JPJF01000138_gene3005	NA	NA
UHGV-2008458_43	Structural annotation	PF01446	NA	NA
UHGV-2008458_44	PHROG	phrog_34638	NA	unknown function