UHGV-2008675

Genome information

Genome length 32,857 bps

CDS count 41

Completeness 70.48% (medium-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-2008675
vOTU ID	vOTU-030084
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023498\|Ga0257046_100136\|provirus_1_38850
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.9
Jumbo phage	No

Genome content
Genome length	32,857 bps
GC content	50.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	95.02%
Average CDS length	765.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2008675_2	Structural annotation	PF02973	NA	NA
UHGV-2008675_3	Structural annotation	PF10651, NF009453	NA	NA
UHGV-2008675_5	PHROG	phrog_6616	tail protein	tail
UHGV-2008675_5	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-2008675_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2008675_5	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2008675_6	PHROG	phrog_1194	NA	unknown function
UHGV-2008675_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2008675_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2008675_7	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-2008675_7	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2008675_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2008675_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2008675_8	PHROG	phrog_8355	NA	unknown function
UHGV-2008675_8	UniRef90	UniRef90_A0A1H3Y2Z5	Bacteriophage Gp15 protein	NA
UHGV-2008675_8	eggNOG-mapper	1151292.QEW_2424	NA	NA
UHGV-2008675_9	PHROG	phrog_8300	NA	unknown function
UHGV-2008675_9	eggNOG-mapper	1122918.KB907248_gene4491	NA	NA
UHGV-2008675_9	Structural annotation	PF06854	NA	NA
UHGV-2008675_10	PHROG	phrog_820	major tail protein	tail
UHGV-2008675_10	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-2008675_10	eggNOG-mapper	1415775.U729_2611	NA	NA
UHGV-2008675_10	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2008675_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2008675_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2008675_11	UniRef90	UniRef90_UPI0015BCA354	minor capsid protein	NA
UHGV-2008675_11	eggNOG-mapper	717606.PaecuDRAFT_3128	NA	NA
UHGV-2008675_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2008675_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2008675_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2008675_12	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-2008675_13	PHROG	phrog_8710	NA	unknown function
UHGV-2008675_13	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-2008675_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2008675_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2008675_14	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-2008675_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-2008675_15	UniRef90	UniRef90_R6DLA5	Phage major capsid protein	NA
UHGV-2008675_15	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-2008675_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2008675_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2008675_16	Structural annotation	MF_02110	NA	NA
UHGV-2008675_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2008675_18	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-2008675_18	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-2008675_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2008675_18	COG	COG2369	NA	NA
UHGV-2008675_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-2008675_19	UniRef90	UniRef90_R6E386	Phage minor capsid protein	NA
UHGV-2008675_19	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2008675_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2008675_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2008675_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2008675_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2008675_20	UniRef90	UniRef90_A0A1M4ZB17	Phage terminase, large subunit, PBSX family	NA
UHGV-2008675_20	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-2008675_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-2008675_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2008675_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2008675_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2008675_21	UniRef90	UniRef90_A0A1Q9JQ42	Terminase small subunit	NA
UHGV-2008675_21	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2008675_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2008675_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2008675_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2008675_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2008675_22	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2008675_22	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2008675_22	Structural annotation	PF04545	NA	NA
UHGV-2008675_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2008675_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2008675_23	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-2008675_23	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-2008675_23	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2008675_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2008675_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2008675_23	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2008675_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2008675_24	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-2008675_24	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-2008675_24	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2008675_26	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2008675_26	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-2008675_26	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-2008675_26	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2008675_26	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2008675_26	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2008675_27	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2008675_27	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2008675_27	UniRef90	UniRef90_A0A329UVL7	POLAc domain-containing protein	NA
UHGV-2008675_27	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-2008675_27	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2008675_27	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2008675_27	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2008675_28	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2008675_28	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-2008675_28	eggNOG-mapper	1408437.JNJN01000081_gene1517	NA	NA
UHGV-2008675_28	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2008675_28	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2008675_30	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2008675_30	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-2008675_30	eggNOG-mapper	1203606.HMPREF1526_00234	NA	NA
UHGV-2008675_30	Pfam	PF10926	NA	DUF2800
UHGV-2008675_30	COG	COG2887	RecB family exonuclease	NA
UHGV-2008675_30	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2008675_31	PHROG	phrog_22695	NA	unknown function
UHGV-2008675_31	eggNOG-mapper	1120971.AUCA01000043_gene1180	NA	NA
UHGV-2008675_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2008675_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2008675_33	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-2008675_33	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-2008675_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2008675_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2008675_33	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2008675_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2008675_36	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2008675_36	UniRef90	UniRef90_UPI001C122BB1	antA/AntB antirepressor family protein	NA
UHGV-2008675_36	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-2008675_36	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2008675_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2008675_36	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2008675_36	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2008675_38	UniRef90	UniRef90_A0A348Z948	Transcriptional regulator	NA
UHGV-2008675_38	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-2008675_38	Pfam	PF05339	NA	DUF739
UHGV-2008675_38	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2008675_39	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2008675_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2008675_39	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-2008675_39	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-2008675_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2008675_39	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2008675_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2008675_39	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2008675_40	PHROG	phrog_1847	NA	unknown function
UHGV-2008675_40	UniRef90	UniRef90_A0A1E3UAB7	T5orf172 domain-containing protein	NA
UHGV-2008675_40	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-2008675_40	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2008675_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2008675_40	Structural annotation	PF19962	NA	NA
UHGV-2008675_41	KOfam	K14059	int; integrase	NA
UHGV-2008675_41	PHROG	phrog_1	integrase	integration and excision
UHGV-2008675_41	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-2008675_41	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-2008675_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2008675_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2008675_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA