UHGV-2010154

Genome information

Genome length 30,640 bps

CDS count 43

Completeness 89.06% (medium-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-2010154
vOTU ID	vOTU-040444
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029042\|Ga0169701_100384\|provirus_1050_31689
BioSample	SAMEA2580120
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.23
Jumbo phage	No

Genome content
Genome length	30,640 bps
GC content	39.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.20%
Average CDS length	654.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2010154_1	PHROG	phrog_199	holin	lysis
UHGV-2010154_1	UniRef90	UniRef90_A0A373XMP0	Holin	NA
UHGV-2010154_1	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2010154_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2010154_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2010154_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2010154_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2010154_2	PHROG	phrog_21357	endolysin	lysis
UHGV-2010154_2	UniRef90	UniRef90_R6UJ33	Putative peptidoglycan binding domain protein	NA
UHGV-2010154_2	eggNOG-mapper	445971.ANASTE_00092	CHAP domain	NA
UHGV-2010154_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-2010154_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2010154_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2010154_2	Structural annotation	PF05382, COG3409	NA	NA
UHGV-2010154_3	PHROG	phrog_1382	NA	unknown function
UHGV-2010154_3	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-2010154_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2010154_3	Structural annotation	NF040910	NA	NA
UHGV-2010154_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2010154_7	UniRef90	UniRef90_A0A3R6I686	Prophage_tail domain-containing protein	NA
UHGV-2010154_7	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2010154_7	COG	COG4926	Phage-related protein	NA
UHGV-2010154_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2010154_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2010154_8	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-2010154_8	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-2010154_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2010154_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2010154_9	PHROG	phrog_23464	NA	unknown function
UHGV-2010154_9	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-2010154_9	COG	COG5283	Phage-related tail protein	NA
UHGV-2010154_9	Structural annotation	COG3941	NA	NA
UHGV-2010154_10	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-2010154_11	PHROG	phrog_885	major tail protein	tail
UHGV-2010154_11	UniRef90	UniRef90_UPI001C11708A	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-2010154_11	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-2010154_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2010154_12	Structural annotation	PF12691	NA	NA
UHGV-2010154_13	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-2010154_13	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-2010154_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2010154_13	Structural annotation	TIGR01725	NA	NA
UHGV-2010154_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2010154_14	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-2010154_14	eggNOG-mapper	358681.BBR47_29190	head-tail adaptor	NA
UHGV-2010154_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2010154_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2010154_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2010154_15	PHROG	phrog_2550	NA	unknown function
UHGV-2010154_15	UniRef90	UniRef90_G2G0W0	Prophage pi2 protein 35	NA
UHGV-2010154_15	eggNOG-mapper	396034.A6XMJ8_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-2010154_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2010154_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-2010154_16	UniRef90	UniRef90_F1TFK1	Phage major capsid protein, HK97 family	NA
UHGV-2010154_16	eggNOG-mapper	588581.Cpap_1272	Phage capsid family	NA
UHGV-2010154_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2010154_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2010154_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2010154_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2010154_17	KOfam	K06904	NA	NA
UHGV-2010154_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2010154_17	UniRef90	UniRef90_H2JJA3	Phage prohead protease, HK97 family	NA
UHGV-2010154_17	eggNOG-mapper	755731.Clo1100_0546	Phage prohead protease, HK97 family	NA
UHGV-2010154_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2010154_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2010154_17	COG	COG3740	Phage head maturation protease	NA
UHGV-2010154_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2010154_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-2010154_18	UniRef90	UniRef90_H2JJA2	Phage portal protein, HK97 family	NA
UHGV-2010154_18	eggNOG-mapper	755731.Clo1100_0545	Phage portal protein, HK97 family	NA
UHGV-2010154_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2010154_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2010154_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2010154_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2010154_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2010154_19	UniRef90	UniRef90_A0A0L6JG50	Terminase	NA
UHGV-2010154_19	eggNOG-mapper	398512.JQKC01000009_gene448	Phage Terminase	NA
UHGV-2010154_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2010154_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2010154_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2010154_19	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2010154_20	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2010154_20	UniRef90	UniRef90_UPI0004135207	P27 family phage terminase small subunit	NA
UHGV-2010154_20	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-2010154_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2010154_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2010154_22	PHROG	phrog_824	NA	unknown function
UHGV-2010154_22	UniRef90	UniRef90_A0A3R6I6C8	VRR-NUC domain-containing protein	NA
UHGV-2010154_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-2010154_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2010154_22	Structural annotation	PF08774	NA	NA
UHGV-2010154_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2010154_23	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-2010154_23	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-2010154_23	Structural annotation	PF21578	NA	NA
UHGV-2010154_25	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2010154_26	PHROG	phrog_15609	NA	unknown function
UHGV-2010154_26	UniRef90	UniRef90_A0A3A6JZQ1	NA	NA
UHGV-2010154_26	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2010154_26	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2010154_27	PHROG	phrog_8470	NA	unknown function
UHGV-2010154_27	UniRef90	UniRef90_UPI001409E5A2	PcfJ domain-containing protein	NA
UHGV-2010154_27	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-2010154_27	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2010154_27	Structural annotation	PF14284	NA	NA
UHGV-2010154_28	PHROG	phrog_38338	NA	unknown function
UHGV-2010154_28	UniRef90	UniRef90_UPI00141323F6	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2010154_28	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2010154_32	PHROG	phrog_34937	NA	unknown function
UHGV-2010154_36	UniRef90	UniRef90_R6R313	NA	NA
UHGV-2010154_36	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2010154_36	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2010154_37	UniRef90	UniRef90_R6R9C1	HTH cro/C1-type domain-containing protein	NA
UHGV-2010154_37	eggNOG-mapper	718252.FP2_04820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2010154_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2010154_38	PHROG	phrog_1914	NA	unknown function
UHGV-2010154_38	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2010154_38	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2010154_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2010154_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2010154_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2010154_39	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-2010154_39	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2010154_39	UniRef90	UniRef90_A0A4Q5EM50	Exonuclease	NA
UHGV-2010154_39	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-2010154_39	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2010154_39	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2010154_39	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2010154_39	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2010154_39	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2010154_40	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2010154_40	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2010154_40	UniRef90	UniRef90_UPI0005D25C1A	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2010154_40	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2010154_40	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2010154_40	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2010154_40	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2010154_41	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2010154_41	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2010154_41	UniRef90	UniRef90_UPI0005D18D19	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2010154_41	eggNOG-mapper	1514668.JOOA01000001_gene180	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2010154_41	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2010154_41	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2010154_41	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2010154_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2010154_42	PHROG	phrog_95	integrase	integration and excision
UHGV-2010154_42	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-2010154_42	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-2010154_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2010154_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-2010154_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2010154_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2010154_42	Structural annotation	PF00239, PF07508, PF19962, NF041201, COG1961	NA	NA
UHGV-2010154_43	KOfam	K06406	spoVAD; stage V sporulation protein AD	NA
UHGV-2010154_43	UniRef90	UniRef90_R6U7Z8	Stage V sporulation protein AD	NA
UHGV-2010154_43	eggNOG-mapper	537013.CLOSTMETH_00976	Stage V sporulation protein AD	NA
UHGV-2010154_43	Pfam	PF07451	Stage V sporulation protein AD (SpoVAD)	SpoVAD
UHGV-2010154_43	NCBIFam	NF006160.0	stage V sporulation protein AD	NA
UHGV-2010154_43	COG	COG0332	3-oxoacyl-[acyl-carrier-protein] synthase III	NA