UHGV-2010251

Genome information

Genome length 29,987 bps

CDS count 45

Completeness 70.44% (medium-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-2010251
vOTU ID	vOTU-040532
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023545\|Ga0257041_100045\|provirus_2_29988
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.3
Jumbo phage	No

Genome content
Genome length	29,987 bps
GC content	50.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	89.31%
Average CDS length	598.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2010251_1	PHROG	phrog_18723	NA	unknown function
UHGV-2010251_2	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-2010251_3	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2010251_3	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-2010251_3	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-2010251_4	PHROG	phrog_13046	NA	unknown function
UHGV-2010251_4	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-2010251_4	Structural annotation	PF20387	NA	NA
UHGV-2010251_5	PHROG	phrog_371	major head protein	head and packaging
UHGV-2010251_5	UniRef90	UniRef90_R5AAY6	Mu-like_gpT domain-containing protein	NA
UHGV-2010251_5	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-2010251_5	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-2010251_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2010251_6	PHROG	phrog_24113	NA	unknown function
UHGV-2010251_6	Structural annotation	PF11133, COG5471	NA	NA
UHGV-2010251_7	PHROG	phrog_35275	NA	unknown function
UHGV-2010251_7	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-2010251_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-2010251_10	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-2010251_10	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-2010251_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2010251_11	PHROG	phrog_216	integrase	integration and excision
UHGV-2010251_11	UniRef90	UniRef90_R5AM78	Integrase family protein	NA
UHGV-2010251_11	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-2010251_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2010251_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2010251_11	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2010251_12	PHROG	phrog_24361	terminase	head and packaging
UHGV-2010251_12	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-2010251_12	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-2010251_12	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2010251_12	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2010251_13	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2010251_13	UniRef90	UniRef90_A0A316MAA8	Xaa-His dipeptidase	NA
UHGV-2010251_13	eggNOG-mapper	97138.C820_00620	transposase activity	NA
UHGV-2010251_13	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2010251_13	Structural annotation	PF07141	NA	NA
UHGV-2010251_14	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2010251_14	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2010251_14	UniRef90	UniRef90_R5AEV9	Cytotoxic translational repressor of toxin-antitoxin stability system	NA
UHGV-2010251_14	eggNOG-mapper	97139.C824_00468	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-2010251_14	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2010251_14	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2010251_14	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2010251_15	eggNOG-mapper	1235792.C808_02931	NA	NA
UHGV-2010251_16	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2010251_16	UniRef90	UniRef90_R5AM83	HTH cro/C1-type domain-containing protein	NA
UHGV-2010251_16	eggNOG-mapper	445972.ANACOL_01859	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2010251_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2010251_16	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2010251_16	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2010251_18	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-2010251_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2010251_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2010251_20	UniRef90	UniRef90_R5AEW4	DNA helicase	NA
UHGV-2010251_20	eggNOG-mapper	97138.C820_00625	Participates in initiation and elongation during chromosome replication	NA
UHGV-2010251_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2010251_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2010251_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-2010251_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2010251_21	PHROG	phrog_15768	NA	unknown function
UHGV-2010251_21	UniRef90	UniRef90_R5AB02	DnaD domain protein	NA
UHGV-2010251_21	eggNOG-mapper	1231057.AMGD01000018_gene3636	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-2010251_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2010251_21	Structural annotation	PF09681, TIGR01714, COG1846	NA	NA
UHGV-2010251_22	UniRef90	UniRef90_A0A401LG95	MazG domain-containing protein	NA
UHGV-2010251_22	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2010251_24	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-2010251_24	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2010251_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2010251_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2010251_29	UniRef90	UniRef90_A0A401LG78	HTH cro/C1-type domain-containing protein	NA
UHGV-2010251_29	eggNOG-mapper	1378168.N510_00479	sequence-specific DNA binding	NA
UHGV-2010251_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010251_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2010251_29	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-2010251_32	PHROG	phrog_9467	NA	unknown function
UHGV-2010251_32	UniRef90	UniRef90_UPI001C3853B3	Gp49 family protein	NA
UHGV-2010251_32	eggNOG-mapper	1226322.HMPREF1545_00781	NA	NA
UHGV-2010251_32	Pfam	PF13876	NA	Phage_gp49_66
UHGV-2010251_32	dbAPIS	APIS043	NA	NA
UHGV-2010251_33	PHROG	phrog_774	NA	unknown function
UHGV-2010251_33	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2010251_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2010251_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2010251_34	UniRef90	UniRef90_R5AMA1	Single-stranded DNA-binding protein	NA
UHGV-2010251_34	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2010251_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2010251_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2010251_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2010251_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2010251_34	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2010251_35	PHROG	phrog_1029	NA	unknown function
UHGV-2010251_35	eggNOG-mapper	1510440.A0A068EPX8_9CAUD	NA	NA
UHGV-2010251_35	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2010251_36	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2010251_36	UniRef90	UniRef90_A0A350U067	Replication terminator protein	NA
UHGV-2010251_36	eggNOG-mapper	1443125.Z962_p0033	replication terminator protein, phage associated	NA
UHGV-2010251_43	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2010251_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2010251_43	UniRef90	UniRef90_R5AEY7	Helix-turn-helix protein	NA
UHGV-2010251_43	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-2010251_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2010251_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2010251_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2010251_44	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-2010251_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2010251_45	PHROG	phrog_95	integrase	integration and excision
UHGV-2010251_45	UniRef90	UniRef90_R5AMB7	Recombinase	NA
UHGV-2010251_45	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-2010251_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2010251_45	Pfam	PF07508	Recombinase	Recombinase
UHGV-2010251_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2010251_45	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA