UHGV-2010257

Genome information

Genome length 32,990 bps

CDS count 55

Completeness 85.31% (medium-quality)

geNomad score 0.9697

Prediction confidence Confident

Genome information
Genome ID	UHGV-2010257
vOTU ID	vOTU-021699
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023545\|Ga0257041_100100\|provirus_71194_108531
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9697
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.86
Jumbo phage	No

Genome content
Genome length	32,990 bps
GC content	47.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.85%
Average CDS length	554.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2010257_1	PHROG	phrog_9605	NA	unknown function
UHGV-2010257_1	UniRef90	UniRef90_A0A1Y4LLN4	NA	NA
UHGV-2010257_1	eggNOG-mapper	1410628.JNKS01000004_gene2023	NA	NA
UHGV-2010257_1	Pfam	PF12358	NA	DUF3644
UHGV-2010257_1	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-2010257_1	Structural annotation	PF12358, COG1895	NA	NA
UHGV-2010257_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2010257_2	UniRef90	UniRef90_A0A564SCK3	HTH cro/C1-type domain-containing protein	NA
UHGV-2010257_2	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-2010257_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010257_2	Pfam	PF13413	Helix-turn-helix domain	HTH_25
UHGV-2010257_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2010257_3	UniRef90	UniRef90_UPI00164C4E57	NA	NA
UHGV-2010257_3	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-2010257_3	Pfam	PF05339	NA	DUF739
UHGV-2010257_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2010257_3	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2010257_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2010257_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2010257_4	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-2010257_4	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-2010257_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2010257_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2010257_4	COG	COG3617	Prophage antirepressor	NA
UHGV-2010257_4	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-2010257_8	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-2010257_8	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-2010257_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2010257_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2010257_12	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2010257_12	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2010257_12	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2010257_12	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-2010257_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2010257_13	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2010257_13	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-2010257_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2010257_14	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2010257_14	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-2010257_15	PHROG	phrog_15768	NA	unknown function
UHGV-2010257_15	UniRef90	UniRef90_A0A352UTP8	NA	NA
UHGV-2010257_15	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-2010257_15	AcrCatalog	cluster_38323	NA	NA
UHGV-2010257_15	Pfam	PF19808	NA	DUF6291
UHGV-2010257_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2010257_15	Structural annotation	PF19808	NA	NA
UHGV-2010257_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2010257_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2010257_16	UniRef90	UniRef90_A0A396NX04	IstB_IS21 domain-containing protein	NA
UHGV-2010257_16	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-2010257_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2010257_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2010257_16	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2010257_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2010257_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2010257_17	UniRef90	UniRef90_R5ADK0	Single-stranded DNA-binding protein	NA
UHGV-2010257_17	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2010257_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2010257_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2010257_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2010257_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2010257_17	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2010257_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2010257_18	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-2010257_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2010257_18	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2010257_19	PHROG	phrog_924	NA	unknown function
UHGV-2010257_19	UniRef90	UniRef90_UPI000CF85C21	NA	NA
UHGV-2010257_19	Pfam	PF04448	NA	DUF551
UHGV-2010257_20	Structural annotation	NF007260	NA	NA
UHGV-2010257_21	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2010257_21	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-2010257_21	Structural annotation	PF11998, COG5420	NA	NA
UHGV-2010257_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2010257_22	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-2010257_22	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-2010257_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2010257_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2010257_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2010257_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2010257_24	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-2010257_24	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-2010257_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2010257_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2010257_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2010257_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2010257_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2010257_25	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-2010257_25	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-2010257_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2010257_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2010257_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2010257_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2010257_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2010257_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2010257_26	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-2010257_26	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-2010257_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2010257_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2010257_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2010257_27	UniRef90	UniRef90_R5AIZ3	Minor capsid 2 protein	NA
UHGV-2010257_27	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2010257_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2010257_27	COG	COG2369	NA	NA
UHGV-2010257_27	Structural annotation	PF06152	NA	NA
UHGV-2010257_28	Structural annotation	PF11344	NA	NA
UHGV-2010257_29	PHROG	phrog_15041	NA	unknown function
UHGV-2010257_29	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-2010257_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2010257_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-2010257_31	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2010257_31	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-2010257_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2010257_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2010257_33	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2010257_34	PHROG	phrog_3366	NA	unknown function
UHGV-2010257_34	Pfam	PF20536	NA	DUF6751
UHGV-2010257_34	Structural annotation	PF20536, COG1853	NA	NA
UHGV-2010257_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2010257_35	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-2010257_35	eggNOG-mapper	903814.ELI_3205	Minor capsid protein	NA
UHGV-2010257_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2010257_35	Structural annotation	PF11114	NA	NA
UHGV-2010257_36	PHROG	phrog_3266	tail completion	connector
UHGV-2010257_36	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-2010257_36	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-2010257_36	Structural annotation	PF12691	NA	NA
UHGV-2010257_37	PHROG	phrog_3099	NA	unknown function
UHGV-2010257_37	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-2010257_37	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-2010257_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2010257_38	Structural annotation	PF20378	NA	NA
UHGV-2010257_39	PHROG	phrog_706	NA	unknown function
UHGV-2010257_39	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-2010257_39	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-2010257_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2010257_39	Structural annotation	PF06854	NA	NA
UHGV-2010257_40	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2010257_40	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-2010257_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2010257_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2010257_41	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-2010257_41	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-2010257_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-2010257_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2010257_42	PHROG	phrog_863	tail fiber assembly	tail
UHGV-2010257_42	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-2010257_42	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-2010257_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2010257_42	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2010257_42	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2010257_42	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-2010257_44	PHROG	phrog_2310	NA	unknown function
UHGV-2010257_44	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-2010257_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2010257_45	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-2010257_45	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-2010257_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2010257_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2010257_45	COG	COG4926	Phage-related protein	NA
UHGV-2010257_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2010257_46	PHROG	phrog_937	hemolysin	other
UHGV-2010257_46	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2010257_48	PHROG	phrog_13256	NA	unknown function
UHGV-2010257_48	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-2010257_49	UniRef90	UniRef90_R5ABZ9	DNA-binding helix-turn-helix protein	NA
UHGV-2010257_49	eggNOG-mapper	97138.C820_01991	Helix-turn-helix XRE-family like proteins	NA
UHGV-2010257_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010257_49	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-2010257_51	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2010257_51	UniRef90	UniRef90_R5ADG8	Putative transcriptional regulator XRE family	NA
UHGV-2010257_51	eggNOG-mapper	1007096.BAGW01000035_gene1350	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2010257_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2010257_51	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2010257_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2010257_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2010257_53	UniRef90	UniRef90_A0A7I8D1H8	Putative antirepressor - phage associated	NA
UHGV-2010257_53	eggNOG-mapper	1232449.BAHV02000010_gene2739	BRO family, N-terminal domain	NA
UHGV-2010257_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2010257_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2010257_53	COG	COG3617	Prophage antirepressor	NA
UHGV-2010257_53	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2010257_54	PHROG	phrog_36029	NA	unknown function
UHGV-2010257_54	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-2010257_54	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-2010257_55	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2010257_55	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-2010257_55	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-2010257_55	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2010257_55	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA